Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL713922.2-201ENST00000619384 716 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC024560.2-201ENST00000507981 1497 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 ISCA1P6-201ENST00000427740 390 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 VDAC1P3-201ENST00000434069 851 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC009961.2-201ENST00000435771 251 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 RPL21P89-201ENST00000444021 467 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 RPL7P49-201ENST00000471402 708 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC012158.1-204ENST00000483430 465 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC010587.1-201ENST00000505809 469 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 IGKV2D-23-201ENST00000518179 286 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC007599.1-201ENST00000568688 1174 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC004067.1-201ENST00000608733 700 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC090425.2-201ENST00000608818 501 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC069200.1-201ENST00000609511 323 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 AC015540.1-201ENST00000615828 501 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 uc_338.12-201ENST00000616344 181 ntBASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC9Q9Y3X0 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 ARHGAP42P3-201ENST00000443989 2508 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 Y_RNA.517-201ENST00000384551 106 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 RPL23AP32-201ENST00000395315 459 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 PVALB-202ENST00000404171 422 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC069157.1-201ENST00000421749 137 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC019097.1-201ENST00000424783 735 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 MTND1P12-201ENST00000455231 147 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 RPS15AP36-201ENST00000492022 382 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC025164.1-201ENST00000496249 478 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 CCNG2P1-201ENST00000549521 1000 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 MIR3913-1-201ENST00000577744 102 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC113403.1-201ENST00000604910 193 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 AC091834.1-201ENST00000614543 472 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 Xist_exon1.1-201ENST00000618930 85 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 MIR8059-201ENST00000620427 81 ntBASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC9Q9Y3X0 ADAM5-202ENST00000399789 1942 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC092447.7-201ENST00000422212 1621 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC092326.2-201ENST00000624772 1561 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 MIR331-201ENST00000362302 94 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 SNORA63.1-201ENST00000362493 131 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 RNY3P13-201ENST00000365542 102 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 RNU2-71P-201ENST00000411395 189 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC127391.1-201ENST00000411737 98 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL356095.1-201ENST00000417217 199 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC093156.1-201ENST00000440382 670 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL162389.1-201ENST00000449233 177 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 NIPA2P2-201ENST00000496376 1083 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 MYL12BP2-201ENST00000503948 512 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC114967.1-201ENST00000504890 259 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 RN7SKP244-201ENST00000516513 307 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 TRAV8-5-201ENST00000537369 341 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 TUG1_2.1-201ENST00000614234 87 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL133173.2-201ENST00000614270 90 ntBASIC6.03□□□□□ -1.44
CCDC9Q9Y3X0 AL355810.1-201ENST00000614629 552 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms