Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 HSPE1P12-201ENST00000412576 301 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 RPL26P29-201ENST00000415623 438 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC245028.1-201ENST00000423259 256 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 MTND6P13-201ENST00000443510 523 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC098824.1-201ENST00000453565 980 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AP1S2P1-201ENST00000457344 379 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 RN7SL738P-201ENST00000470264 297 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 UQCRHP4-201ENST00000471686 272 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 OR5H5P-201ENST00000503164 928 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC093840.1-201ENST00000511599 336 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC026726.1-201ENST00000512859 601 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 SNORA18.6-201ENST00000516792 115 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 RNU6-201P-201ENST00000517100 61 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 RN7SKP234-201ENST00000517173 224 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 MTCO2P4-201ENST00000517968 247 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 CENPUP2-201ENST00000555897 1186 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC087481.2-201ENST00000565492 330 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AL360157.1-201ENST00000565962 87 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 MIR4277-201ENST00000578298 84 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 NRBF2P1-201ENST00000587407 859 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 AC011468.4-201ENST00000603942 409 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 U4.5-201ENST00000617137 123 ntBASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 UBE3AP2-201ENST00000429033 2259 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 RNA5SP258-201ENST00000362750 119 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 FCF1P10-201ENST00000407590 479 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 RNU2-15P-201ENST00000410692 191 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 C1DP2-201ENST00000418167 426 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 EIF1P1-201ENST00000421436 341 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC009480.2-201ENST00000422916 432 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 ISCA1P1-201ENST00000426679 387 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 OR51AB1P-201ENST00000429046 620 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 EZH2P1-201ENST00000431167 291 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 TPT1P13-201ENST00000449760 499 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 RN7SL459P-201ENST00000481078 302 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 SETP2-201ENST00000553886 926 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC008745.1-201ENST00000604064 271 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC115621.1-201ENST00000604653 858 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AL160394.1-201ENST00000624765 724 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AC099654.13-201ENST00000639774 207 ntBASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
LIMCH1Q9UPQ0 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-359P-201ENST00000365466 108 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RNU11-4P-201ENST00000391149 133 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RPS20P2-201ENST00000402520 389 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RNU2-8P-201ENST00000410727 190 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 SPA17P1-201ENST00000416656 452 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 HMGB1P37-201ENST00000439613 609 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RPS20P32-201ENST00000456044 356 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RPS20P24-201ENST00000457473 361 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC105137.1-201ENST00000484355 562 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MTND4LP26-201ENST00000518144 282 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms