Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 KLF3P2-201ENST00000465138 268 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AL592156.1-201ENST00000508758 304 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC006499.6-201ENST00000511169 607 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 SNORA67.7-201ENST00000516664 135 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 RNU6-201P-201ENST00000517100 61 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC009101.1-201ENST00000568135 242 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 CYP4A43P-201ENST00000568156 121 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC006130.2-201ENST00000586202 326 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 OR4G1P-201ENST00000588632 938 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 TPMTP1-201ENST00000592307 737 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 YWHAQP7-201ENST00000603536 658 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC108747.1-201ENST00000609508 535 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC091834.1-201ENST00000614543 472 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AL136964.1-201ENST00000622038 2990 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS4AQ9UN37 EIF2AP4-201ENST00000424793 1781 ntBASIC4.17□□□□□ -1.74
VPS4AQ9UN37 AC008725.1-201ENST00000605123 2263 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RNU6-28P-201ENST00000362378 107 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RN7SKP280-201ENST00000364196 304 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RNA5SP366-201ENST00000365454 123 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 SNORD82-201ENST00000365530 70 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RNU1-13P-201ENST00000384499 162 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 U3.29-201ENST00000391296 212 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RPS20P2-201ENST00000402520 389 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RPL7P25-201ENST00000404151 721 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MIR1911-201ENST00000410783 80 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 HMGB3P23-201ENST00000414981 585 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RPL7P2-201ENST00000427639 268 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL132765.1-201ENST00000434165 553 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 OR4C10P-201ENST00000434991 931 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MTCYBP45-201ENST00000435243 565 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 SKP1P1-201ENST00000438081 489 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 SDCBPP1-201ENST00000440192 890 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 ABCF2P2-201ENST00000450549 296 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC098824.1-201ENST00000453565 980 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 Z82190.1-201ENST00000454534 490 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC079804.1-201ENST00000461922 436 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 ACTR3P3-201ENST00000480448 893 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC034222.1-201ENST00000494052 532 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 BNIP3P41-201ENST00000503774 571 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MTCO3P44-201ENST00000510977 541 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 IGKV2-23-201ENST00000518729 323 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AP003730.1-201ENST00000524605 285 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 OR5G4P-201ENST00000525251 760 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL352979.3-201ENST00000553515 247 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RPL21P5-201ENST00000554662 472 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MIR3158-1-201ENST00000583596 81 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AL591034.3-201ENST00000605511 685 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC091965.4-201ENST00000607691 587 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 MIR3653-201ENST00000625572 110 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 RNA5SP196-201ENST00000625967 102 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 AC027514.1-201ENST00000588561 1603 ntBASIC4.16□□□□□ -1.74
VPS4AQ9UN37 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS4AQ9UN37 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS4AQ9UN37 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4AQ9UN37 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 223.5 ms