Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC103710.3-201ENST00000608157 948 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AL139418.1-201ENST00000613613 177 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC008993.2-201ENST00000631744 806 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS28Q9UK41 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS28Q9UK41 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 RNU6-97P-201ENST00000363387 104 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 RNU6-359P-201ENST00000365466 108 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 RPS15AP38-201ENST00000413110 372 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC018644.1-201ENST00000429934 551 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 NANOGP10-201ENST00000453325 895 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC234775.1-201ENST00000454247 670 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AL133162.1-201ENST00000463228 453 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 RPL23AP62-201ENST00000463396 453 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 ACTR3P3-201ENST00000480448 893 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 NIPA2P2-201ENST00000496376 1083 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 RNU1-61P-201ENST00000516107 151 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 RNU6-528P-201ENST00000516926 100 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AL391156.1-201ENST00000554965 554 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 AP001029.3-201ENST00000588063 596 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 VN1R92P-201ENST00000598511 928 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 BDH2P1-201ENST00000602288 736 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC106028.5-201ENST00000610332 395 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AL121772.2-201ENST00000614331 297 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC021755.4-201ENST00000616620 456 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 U7.8-201ENST00000619968 63 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC002550.2-201ENST00000621246 394 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC018816.2-201ENST00000621460 353 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 CR392039.5-201ENST00000623201 510 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AC007490.1-201ENST00000624321 703 ntBASIC3.87□□□□□ -1.79
VPS28Q9UK41 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS28Q9UK41 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS28Q9UK41 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS28Q9UK41 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS28Q9UK41 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS28Q9UK41 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 FRG1BP-201ENST00000278882 761 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 RNU6-1214P-201ENST00000363650 109 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL359837.1-201ENST00000381357 287 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 U8.11-201ENST00000384699 133 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 U8.12-201ENST00000384701 133 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 RSL24D1P4-201ENST00000400938 484 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RPL30P2-201ENST00000414021 291 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL035407.1-201ENST00000429211 571 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 YWHAZP7-201ENST00000436906 631 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RABEPKP1-201ENST00000440529 1026 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL133547.1-201ENST00000448546 220 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC010655.1-201ENST00000449336 292 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 U8.18-201ENST00000459285 133 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC078785.3-201ENST00000476607 425 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC084198.1-201ENST00000477747 402 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RPL7P23-201ENST00000493874 747 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 HMGN1P11-201ENST00000508668 303 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RAC1P2-201ENST00000511164 579 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 SNORA3.4-201ENST00000515969 96 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 RNA5SP208-201ENST00000516156 78 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 OR5AP1P-201ENST00000529730 940 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 UBE2NP1-201ENST00000545592 458 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 MED28P6-201ENST00000558776 231 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL137849.1-201ENST00000604767 169 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC245389.1-201ENST00000605141 529 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AL034351.1-201ENST00000605288 668 ntBASIC3.86□□□□□ -1.79
VPS28Q9UK41 AC079395.3-201ENST00000615161 484 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms