Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Z99496.1-201ENST00000469424 1477 ntBASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS54Q9P1Q0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.53□□□□□ -1.85
VPS54Q9P1Q0 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
VPS54Q9P1Q0 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
VPS54Q9P1Q0 AC021755.1-201ENST00000559747 1447 ntBASIC3.53□□□□□ -1.85
VPS54Q9P1Q0 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 SNORA51.2-201ENST00000364595 132 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RNU6-730P-201ENST00000383954 104 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RNU6-837P-201ENST00000391056 108 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AL133384.1-201ENST00000412744 351 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 HMGB3P23-201ENST00000414981 585 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 FNDC3CP-201ENST00000420795 1155 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 HSFY1P1-201ENST00000423928 1178 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 HMGB1P12-201ENST00000438594 598 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC004022.1-201ENST00000447766 1066 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC112492.1-201ENST00000449607 712 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 snoU109.3-201ENST00000459477 145 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RPS27P29-201ENST00000463110 252 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC104164.3-201ENST00000467363 1258 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 PABPC1P3-201ENST00000469174 459 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC013828.1-201ENST00000481845 158 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC069528.1-202ENST00000482888 637 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RPL23AP55-201ENST00000498163 452 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 BOLA3P3-201ENST00000505182 232 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC113420.1-201ENST00000507903 571 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RN7SKP244-201ENST00000516513 307 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 RN7SKP57-201ENST00000517248 293 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AP004371.1-201ENST00000525240 214 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC037471.2-201ENST00000564941 598 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 MTND3P13-201ENST00000574391 343 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 MIR5195-201ENST00000583555 115 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC091057.3-201ENST00000602684 733 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AL355812.1-201ENST00000603215 216 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 PART1_2.1-201ENST00000612397 250 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC104763.3-201ENST00000613765 618 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC073968.1-201ENST00000618594 637 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 MIR8057-201ENST00000620957 69 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 MIR622-201ENST00000638396 96 ntBASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS54Q9P1Q0 AC073346.2-201ENST00000624724 2058 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 RNU4-51P-201ENST00000364206 140 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 snoZ40.1-201ENST00000364540 72 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 Y_RNA.333-201ENST00000365274 102 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 Y_RNA.472-201ENST00000384322 102 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 EI24P2-201ENST00000397776 1076 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 RPL7P25-201ENST00000404151 721 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 RPL23AP47-201ENST00000408017 460 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 GTF2IP7-202ENST00000436677 309 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 FTH1P1-201ENST00000437933 532 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AL671855.1-201ENST00000446875 1203 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC092754.2-201ENST00000463506 460 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC138915.2-201ENST00000569776 97 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 MIR3912-201ENST00000577566 105 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AL450489.1-201ENST00000612071 468 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC010975.3-201ENST00000618727 978 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC092184.1-201ENST00000625042 715 ntBASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS54Q9P1Q0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 MIR22-201ENST00000362190 85 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 SUGT1P1-201ENST00000379514 476 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 SNORD116-12-201ENST00000384468 92 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 SNORA46-201ENST00000384762 135 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 RNU2-28P-201ENST00000410457 189 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 LUZP4P1-201ENST00000415420 344 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AC245054.2-201ENST00000415639 319 ntBASIC3.5□□□□□ -1.85
VPS54Q9P1Q0 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms