Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPS20P32-201ENST00000456044 356 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 ATG12P2-201ENST00000456830 416 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 RPL32P34-201ENST00000486380 400 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 NIPA2P2-201ENST00000496376 1083 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 HSPD1P15-201ENST00000505573 1122 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC091515.1-201ENST00000548110 679 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL133457.1-201ENST00000564251 987 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AL669831.4-202ENST00000590817 238 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC006116.10-201ENST00000591836 581 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC025588.3-201ENST00000604182 274 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC025811.1-201ENST00000604312 472 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC124312.4-201ENST00000605533 310 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 U73479.1-201ENST00000618062 168 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC231657.1-201ENST00000624313 397 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC120349.3-201ENST00000624377 529 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 AC006504.1-201ENST00000562493 3666 ntBASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC3Q9BQI4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.53□□□□□ -1.85
CCDC3Q9BQI4 AC010733.2-201ENST00000589496 5702 ntBASIC3.53□□□□□ -1.85
CCDC3Q9BQI4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.53□□□□□ -1.85
CCDC3Q9BQI4 AL356473.1-201ENST00000406203 1408 ntBASIC3.53□□□□□ -1.85
CCDC3Q9BQI4 AP002907.1-201ENST00000606361 1430 ntBASIC3.53□□□□□ -1.85
CCDC3Q9BQI4 AP000526.1-201ENST00000603308 1388 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AL049781.1-201ENST00000623195 3585 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RPL23AP57-201ENST00000332361 466 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RNU6-462P-201ENST00000362659 105 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RNU6-374P-201ENST00000364146 108 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 SNORA4.1-201ENST00000364263 144 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RNVU1-3-201ENST00000364313 161 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RNA5SP267-201ENST00000364893 126 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 SNORD82-201ENST00000365530 70 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 TPMTP2-201ENST00000414372 726 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MTCO2P5-201ENST00000422621 426 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC091390.3-201ENST00000426478 338 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC017083.1-201ENST00000428093 483 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MUPP-201ENST00000438111 566 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC007967.1-201ENST00000455422 1159 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 LINC00888-204ENST00000487386 421 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AP000563.1-201ENST00000490865 758 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 TMEM251P1-201ENST00000503717 318 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 ELOCP32-201ENST00000548625 324 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC107954.1-201ENST00000565906 727 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC136618.2-201ENST00000575091 400 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 BNIP3P11-201ENST00000603878 563 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC106791.2-201ENST00000604680 391 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 RNU6-88P-201ENST00000606801 100 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MIR7851-201ENST00000610611 160 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MIR486-1-201ENST00000612171 68 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC091304.6-201ENST00000619761 202 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC131159.1-201ENST00000621854 213 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC032011.1-201ENST00000611703 1549 ntBASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC3Q9BQI4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 HSPE1P8-201ENST00000406997 288 ntBASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC3Q9BQI4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms