Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPL36AP6-201ENST00000435770 321 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 HMGB1P31-201ENST00000437242 427 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AL445669.2-201ENST00000454425 421 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AP001207.1-201ENST00000524051 481 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 CYP3A51P-201ENST00000633513 256 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 RNU4-74P-201ENST00000411280 161 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AP003467.2-201ENST00000520175 319 ntBASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS13AQ96RL7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.96□□□□□ -2.09
VPS13AQ96RL7 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL021407.1-201ENST00000404531 386 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL356806.1-201ENST00000422524 916 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC012498.1-201ENST00000424037 437 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 RNU6-250P-201ENST00000516958 103 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 OR1S1-201ENST00000624470 978 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL023807.1-201ENST00000407932 359 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC025260.1-201ENST00000548858 430 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL356280.1-201ENST00000603614 379 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC131238.1-201ENST00000617135 328 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 Y_RNA.191-201ENST00000363972 113 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 VN1R31P-201ENST00000417498 730 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL008729.2-201ENST00000606393 473 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS13AQ96RL7 MIR3199-2-201ENST00000636243 86 ntBASIC1.96□□□□□ -2.1
VPS13AQ96RL7 AF127577.6-201ENST00000623352 2191 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AL445685.2-201ENST00000422551 342 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 RNU1-123P-201ENST00000458950 160 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AC011352.3-201ENST00000505162 593 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 HMGB1P41-201ENST00000520234 440 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 MIR6515-201ENST00000619843 57 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 DCAF13P1-201ENST00000495256 1330 ntBASIC1.95□□□□□ -2.1
VPS13AQ96RL7 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC1.95□□□□□ -2.1
VPS13AQ96RL7 MTCO1P7-201ENST00000419523 1542 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 PPP1R2P5-201ENST00000457256 603 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 RPL9P33-201ENST00000484311 566 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 HMGN2P28-201ENST00000606102 262 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 MTND5P27-201ENST00000428871 1720 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 HMGN1P33-201ENST00000432945 451 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 RNA5SP102-201ENST00000516865 106 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AC022709.1-201ENST00000615967 87 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AC008173.1-201ENST00000418901 264 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AL512598.1-201ENST00000610158 273 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 AC084035.1-201ENST00000634543 607 ntBASIC1.94□□□□□ -2.1
VPS13AQ96RL7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC019129.1-201ENST00000403786 261 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 HMGB1P11-201ENST00000413899 637 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 SSXP1-201ENST00000453640 473 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 OR4P1P-201ENST00000530808 1136 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC009501.3-201ENST00000605001 1352 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC009237.8-201ENST00000445492 379 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS13AQ96RL7 AL359740.1-201ENST00000624340 592 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms