Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 PNPT1P2-201ENST00000456768 2050 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP183-201ENST00000362452 119 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNU1-19P-201ENST00000363306 165 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RN7SKP162-201ENST00000363605 345 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-188P-201ENST00000364207 107 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-637P-201ENST00000384050 107 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.463-201ENST00000384271 102 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-505P-201ENST00000384427 107 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RPL30P2-201ENST00000414021 291 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC009302.1-201ENST00000417147 390 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC093151.1-201ENST00000427711 313 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 CFL1P1-202ENST00000432948 411 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RPL19P16-201ENST00000433839 588 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 CEACAMP1-201ENST00000434624 1035 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 CYCSP24-201ENST00000445119 316 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 HMGB3P21-201ENST00000452483 547 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RPL5P30-201ENST00000465511 891 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RPS20P21-201ENST00000466859 343 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 PGAM1P13-201ENST00000507497 754 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-27P-201ENST00000516146 107 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.708-201ENST00000516950 96 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RANP9-201ENST00000519957 271 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 IGKV2-18-201ENST00000522607 343 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC090115.3-201ENST00000553218 849 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AL121576.1-201ENST00000556055 276 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC110743.1-201ENST00000584870 478 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 FKBP1AP1-201ENST00000594588 318 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AL355365.1-201ENST00000616480 294 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AL162373.1-201ENST00000620433 407 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC091925.2-201ENST00000625059 256 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 AC097063.1-201ENST00000426714 1797 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.05□□□□□ -1.6
UBE3DQ7Z6J8 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AP005432.1-201ENST00000580891 3485 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP435-201ENST00000364044 108 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 OR1L6-202ENST00000373684 1044 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-890P-201ENST00000384121 107 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP219-201ENST00000390940 113 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 SNORA75.6-201ENST00000391318 127 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 HMGB3P2-201ENST00000411913 584 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RPS12P5-201ENST00000423449 371 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RPL7L1P9-201ENST00000431298 745 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC053481.1-201ENST00000467217 306 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RN7SL447P-201ENST00000494711 245 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC116655.1-201ENST00000508324 901 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC027369.5-201ENST00000533838 755 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 GNAI2P1-201ENST00000541815 315 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 214.1 ms