Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC011494.1-201ENST00000596454 237 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 YWHAEP7-203ENST00000622054 312 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC010297.1-201ENST00000623948 149 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC092447.7-201ENST00000422212 1621 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 MTND4P35-201ENST00000604257 1375 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC114546.3-201ENST00000623582 1734 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 DCAF13P3-201ENST00000561147 1334 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC007677.1-201ENST00000445757 515 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 RPL23AP70-201ENST00000483361 460 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 SCARNA17.1-201ENST00000516211 143 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 SCARNA17.2-201ENST00000516334 143 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.82□□□□□ -1.96
USP54Q70EL1 AC090695.1-201ENST00000561269 1222 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 AL627309.6-201ENST00000606857 840 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 SCARNA17.4-201ENST00000614296 143 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 MIR8070-201ENST00000616510 88 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 WWP1P1-201ENST00000466609 2769 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 AL359893.1-201ENST00000447628 1580 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP54Q70EL1 RNU4-7P-201ENST00000364758 141 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 Y_RNA.338-201ENST00000365320 114 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 RNU6-321P-201ENST00000410912 106 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP54Q70EL1 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 AC117522.2-201ENST00000510049 657 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 AC010198.2-201ENST00000550612 259 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 MIR4255-201ENST00000579351 72 ntBASIC2.82□□□□□ -1.96
USP54Q70EL1 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.82□□□□□ -1.96
USP54Q70EL1 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 RFC1-217ENST00000639695 867 ntTSL 5 BASIC2.82□□□□□ -1.96
USP54Q70EL1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.82□□□□□ -1.96
USP54Q70EL1 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP54Q70EL1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC2.81□□□□□ -1.96
USP54Q70EL1 MTND5P7-201ENST00000413558 1798 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
USP54Q70EL1 AL161431.1-201ENST00000618966 4205 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP54Q70EL1 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.81□□□□□ -1.96
USP54Q70EL1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP54Q70EL1 SPA17P1-201ENST00000416656 452 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 AL096701.2-201ENST00000416920 238 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.81□□□□□ -1.96
USP54Q70EL1 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.81□□□□□ -1.96
USP54Q70EL1 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.81□□□□□ -1.96
USP54Q70EL1 ATG10-AS1-201ENST00000504846 648 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.81□□□□□ -1.96
USP54Q70EL1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 GNAI2P1-201ENST00000541815 315 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 AMZ2P1-203ENST00000565833 850 ntBASIC2.81□□□□□ -1.96
USP54Q70EL1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.81□□□□□ -1.96
USP54Q70EL1 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
USP54Q70EL1 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.8□□□□□ -1.96
USP54Q70EL1 AL445646.1-201ENST00000431784 216 ntBASIC2.8□□□□□ -1.96
USP54Q70EL1 CBWD4P-201ENST00000445695 655 ntBASIC2.8□□□□□ -1.96
USP54Q70EL1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.8□□□□□ -1.96
USP54Q70EL1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.8□□□□□ -1.96
USP54Q70EL1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.8□□□□□ -1.96
USP54Q70EL1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.8□□□□□ -1.96
USP54Q70EL1 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.8□□□□□ -1.96
USP54Q70EL1 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.8□□□□□ -1.96
USP54Q70EL1 PSMA6P4-201ENST00000603247 718 ntBASIC2.8□□□□□ -1.96
USP54Q70EL1 AC244517.12-201ENST00000623581 663 ntBASIC2.8□□□□□ -1.96
USP54Q70EL1 Y_RNA.118-201ENST00000363300 101 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 RNU1-51P-201ENST00000365345 176 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 RPL23AP36-201ENST00000413895 458 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 SDR42E1P3-201ENST00000438345 502 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.79□□□□□ -1.96
USP54Q70EL1 AL445669.2-201ENST00000454425 421 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC2.79□□□□□ -1.96
USP54Q70EL1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.79□□□□□ -1.96
USP54Q70EL1 MIR3670-2-201ENST00000582974 65 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MIR3670-1-201ENST00000584160 65 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MIR3670-3-201ENST00000584855 65 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 AC060766.3-201ENST00000591442 263 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MIR3670-4-201ENST00000612260 65 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 SNORA50A-202ENST00000629536 136 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
USP54Q70EL1 SNORA81-201ENST00000408493 178 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MTND4LP13-201ENST00000425022 298 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MTCYBP31-201ENST00000438855 1122 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 VN1R96P-201ENST00000446052 858 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 RPL7P31-201ENST00000450192 724 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 MTCYBP14-201ENST00000457471 715 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.79□□□□□ -1.96
USP54Q70EL1 AC120053.1-201ENST00000607706 736 ntBASIC2.79□□□□□ -1.96
USP54Q70EL1 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.79□□□□□ -1.96
USP54Q70EL1 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.78□□□□□ -1.96
USP54Q70EL1 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP54Q70EL1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.78□□□□□ -1.96
USP54Q70EL1 AC108667.1-201ENST00000428618 249 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 CASP3P1-201ENST00000446037 609 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 RPL36AP21-201ENST00000490372 323 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 AC108729.3-201ENST00000513484 108 ntBASIC2.78□□□□□ -1.96
USP54Q70EL1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms