Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 NANOGP10-201ENST00000453325 895 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 MTCO3P16-201ENST00000454456 754 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 RPL31P3-201ENST00000458430 332 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 MEMO1P3-201ENST00000459811 302 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 RPL9P32-201ENST00000464118 620 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC007537.2-201ENST00000472093 511 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC072039.1-201ENST00000477611 581 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6-150P-201ENST00000516237 95 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AL358072.1-201ENST00000604156 575 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 RNU1-30P-201ENST00000606575 163 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC090116.1-201ENST00000615679 446 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 NUP58P1-201ENST00000502546 1738 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 CR381670.1-201ENST00000624291 1693 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 ELL2P3-201ENST00000457883 1602 ntBASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
SYNE3Q6ZMZ3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 Y_RNA.560-201ENST00000384689 102 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 RPL31P1-201ENST00000398116 372 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 RN7SKP266-201ENST00000410232 287 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 RPL17P36-201ENST00000420302 549 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC012065.2-201ENST00000421295 375 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC098826.1-201ENST00000433943 471 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 SNRPEP7-201ENST00000438350 220 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 MTND5P14-201ENST00000441481 1267 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 SUMO2P2-201ENST00000456482 255 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 MTCO3P44-201ENST00000510977 541 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 MTCYBP43-201ENST00000513621 740 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 MTCO1P49-201ENST00000523429 802 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC068587.4-201ENST00000533893 186 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 MIR5186-201ENST00000577504 120 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AP001004.1-201ENST00000582468 324 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 NBR2-204ENST00000587322 63 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC008507.1-201ENST00000587506 734 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 RNA5SP108-201ENST00000605921 117 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC092354.1-201ENST00000606057 376 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC245008.1-201ENST00000608123 476 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC007494.3-201ENST00000624660 743 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC068137.4-201ENST00000638485 296 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 NMD3P1-201ENST00000439704 1488 ntBASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SYNE3Q6ZMZ3 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AC097714.1-201ENST00000511272 1647 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL672167.1-206ENST00000356293 943 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 Y_RNA.77-201ENST00000362962 107 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6-660P-201ENST00000364566 109 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6-343P-201ENST00000364709 104 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RNU6-952P-201ENST00000391164 108 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 U3.29-201ENST00000391296 212 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 MTND4LP20-201ENST00000402379 270 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 CYCSP19-201ENST00000411715 316 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 NPM1P11-201ENST00000417106 855 ntBASIC4.29□□□□□ -1.72
SYNE3Q6ZMZ3 RPL31P45-201ENST00000419532 356 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms