Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.82□□□□□ -2.12
USF3Q68DE3 AC034102.8-201ENST00000615146 484 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 MIR8070-201ENST00000616510 88 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.82□□□□□ -2.12
USF3Q68DE3 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USF3Q68DE3 Y_RNA.118-201ENST00000363300 101 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 RNU6-178P-201ENST00000384631 104 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.81□□□□□ -2.12
USF3Q68DE3 UBE2V2P4-201ENST00000447495 259 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AL118520.1-201ENST00000450770 291 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AC073901.1-201ENST00000462471 408 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AC012181.1-201ENST00000479895 423 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.81□□□□□ -2.12
USF3Q68DE3 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.81□□□□□ -2.12
USF3Q68DE3 OR4U1P-201ENST00000554958 912 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AC090695.1-201ENST00000561269 1222 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.81□□□□□ -2.12
USF3Q68DE3 AL356266.1-201ENST00000623311 483 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
USF3Q68DE3 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USF3Q68DE3 AC011460.1-201ENST00000636268 1834 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USF3Q68DE3 AP001148.1-201ENST00000624124 2359 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
USF3Q68DE3 HMGN2P35-201ENST00000412164 270 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.81□□□□□ -2.12
USF3Q68DE3 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.81□□□□□ -2.12
USF3Q68DE3 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC1.81□□□□□ -2.12
USF3Q68DE3 AL645939.1-201ENST00000453429 797 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AC006483.1-201ENST00000487308 313 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 FAM92A1P2-202ENST00000504766 877 ntBASIC1.81□□□□□ -2.12
USF3Q68DE3 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.81□□□□□ -2.12
USF3Q68DE3 AL359893.1-201ENST00000447628 1580 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
USF3Q68DE3 AC008432.1-201ENST00000615912 1320 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
USF3Q68DE3 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC1.8□□□□□ -2.12
USF3Q68DE3 MTND5P29-201ENST00000458676 1807 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.8□□□□□ -2.12
USF3Q68DE3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
USF3Q68DE3 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.8□□□□□ -2.12
USF3Q68DE3 AC078918.1-201ENST00000498515 228 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC1.8□□□□□ -2.12
USF3Q68DE3 MTND4LP22-201ENST00000508209 276 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 RNU6-295P-201ENST00000516901 104 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 SNORA31.26-201ENST00000517250 137 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.8□□□□□ -2.12
USF3Q68DE3 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC1.8□□□□□ -2.12
USF3Q68DE3 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.8□□□□□ -2.12
USF3Q68DE3 AP001521.1-201ENST00000609150 300 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC1.8□□□□□ -2.12
USF3Q68DE3 MTCO1P14-201ENST00000441695 1559 ntBASIC1.8□□□□□ -2.12
USF3Q68DE3 Y_RNA.466-201ENST00000384294 113 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
USF3Q68DE3 MTND4LP12-201ENST00000448237 295 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC243772.1-201ENST00000451620 410 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC087385.1-201ENST00000475062 312 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.79□□□□□ -2.12
USF3Q68DE3 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.79□□□□□ -2.12
USF3Q68DE3 SUB1P3-201ENST00000564581 315 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC025281.1-201ENST00000567026 265 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 MIR4781-201ENST00000585250 76 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC023043.2-201ENST00000589678 1026 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC016877.3-201ENST00000606778 504 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 MIR6845-201ENST00000613182 61 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 CU459211.1-201ENST00000635667 749 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
USF3Q68DE3 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
USF3Q68DE3 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.79□□□□□ -2.12
USF3Q68DE3 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.79□□□□□ -2.12
USF3Q68DE3 Z82205.1-201ENST00000428456 297 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC092427.1-202ENST00000430569 476 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.79□□□□□ -2.12
USF3Q68DE3 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.79□□□□□ -2.12
USF3Q68DE3 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.79□□□□□ -2.12
USF3Q68DE3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.79□□□□□ -2.12
USF3Q68DE3 AC068339.2-201ENST00000534395 618 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 AC132825.8-201ENST00000640783 297 ntBASIC1.79□□□□□ -2.12
USF3Q68DE3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
USF3Q68DE3 RNA5SP138-201ENST00000365098 114 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 RNU6-1263P-201ENST00000384601 106 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 SNORA40.18-201ENST00000391200 128 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 NPM1P10-201ENST00000398310 865 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 AL450338.1-201ENST00000407987 512 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 AL139156.1-201ENST00000412785 841 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 SPA17P1-201ENST00000416656 452 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 AC108667.1-201ENST00000428618 249 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 RSL24D1P2-201ENST00000445584 366 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 snoU13.18-201ENST00000459483 104 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 SNORA31.11-201ENST00000516528 139 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 AC021733.2-201ENST00000518830 497 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 HMGB1P1-201ENST00000522557 636 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
USF3Q68DE3 MIR5002-201ENST00000584713 97 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 GMCL1P2-201ENST00000605230 823 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
USF3Q68DE3 AL121594.5-201ENST00000631724 573 ntBASIC1.78□□□□□ -2.12
USF3Q68DE3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.78□□□□□ -2.12
USF3Q68DE3 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC1.78□□□□□ -2.13
USF3Q68DE3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.78□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms