Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.11□□□□□ -2.07
VCANP13611 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VCANP13611 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.11□□□□□ -2.07
VCANP13611 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.11□□□□□ -2.07
VCANP13611 AC093767.1-201ENST00000504523 156 ntBASIC2.11□□□□□ -2.07
VCANP13611 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.11□□□□□ -2.07
VCANP13611 MYL12BP1-201ENST00000569826 507 ntBASIC2.11□□□□□ -2.07
VCANP13611 AC093591.3-201ENST00000634516 308 ntBASIC2.11□□□□□ -2.07
VCANP13611 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
VCANP13611 AL354719.1-201ENST00000406535 843 ntBASIC2.11□□□□□ -2.07
VCANP13611 AC016957.1-201ENST00000534895 309 ntBASIC2.11□□□□□ -2.07
VCANP13611 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.11□□□□□ -2.07
VCANP13611 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC2.11□□□□□ -2.07
VCANP13611 MIR5002-201ENST00000584713 97 ntBASIC2.11□□□□□ -2.07
VCANP13611 AL356280.1-201ENST00000603614 379 ntBASIC2.11□□□□□ -2.07
VCANP13611 AC009831.4-201ENST00000620744 325 ntBASIC2.11□□□□□ -2.07
VCANP13611 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VCANP13611 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.1□□□□□ -2.07
VCANP13611 RNA5SP210-201ENST00000391034 120 ntBASIC2.1□□□□□ -2.07
VCANP13611 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 AL353093.1-201ENST00000441292 436 ntBASIC2.1□□□□□ -2.07
VCANP13611 AC125238.1-201ENST00000448842 249 ntBASIC2.1□□□□□ -2.07
VCANP13611 HAR1A.1-201ENST00000459583 118 ntBASIC2.1□□□□□ -2.07
VCANP13611 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.1□□□□□ -2.07
VCANP13611 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.1□□□□□ -2.07
VCANP13611 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.1□□□□□ -2.07
VCANP13611 FRG1DP-201ENST00000635586 771 ntBASIC2.1□□□□□ -2.07
VCANP13611 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 MTND4P35-201ENST00000604257 1375 ntBASIC2.1□□□□□ -2.07
VCANP13611 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.1□□□□□ -2.07
VCANP13611 CU459211.1-201ENST00000635667 749 ntBASIC2.1□□□□□ -2.07
VCANP13611 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.1□□□□□ -2.07
VCANP13611 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VCANP13611 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.1□□□□□ -2.07
VCANP13611 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.1□□□□□ -2.07
VCANP13611 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.1□□□□□ -2.07
VCANP13611 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.1□□□□□ -2.07
VCANP13611 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.09□□□□□ -2.07
VCANP13611 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.09□□□□□ -2.07
VCANP13611 AC108734.3-201ENST00000481241 1165 ntBASIC2.09□□□□□ -2.07
VCANP13611 RN7SL297P-201ENST00000483161 293 ntBASIC2.09□□□□□ -2.07
VCANP13611 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.09□□□□□ -2.07
VCANP13611 AC087441.2-201ENST00000529141 262 ntBASIC2.09□□□□□ -2.07
VCANP13611 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.09□□□□□ -2.07
VCANP13611 AC006272.2-201ENST00000594725 163 ntBASIC2.09□□□□□ -2.07
VCANP13611 AL450489.1-201ENST00000612071 468 ntBASIC2.09□□□□□ -2.07
VCANP13611 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
VCANP13611 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
VCANP13611 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.09□□□□□ -2.08
VCANP13611 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC2.09□□□□□ -2.08
VCANP13611 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.09□□□□□ -2.08
VCANP13611 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.09□□□□□ -2.08
VCANP13611 AC055876.1-202ENST00000567053 138 ntBASIC2.09□□□□□ -2.08
VCANP13611 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.09□□□□□ -2.08
VCANP13611 OR4G1P-201ENST00000588632 938 ntBASIC2.09□□□□□ -2.08
VCANP13611 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
VCANP13611 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.09□□□□□ -2.08
VCANP13611 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.09□□□□□ -2.08
VCANP13611 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC2.09□□□□□ -2.08
VCANP13611 HMGB1P1-201ENST00000522557 636 ntBASIC2.09□□□□□ -2.08
VCANP13611 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.09□□□□□ -2.08
VCANP13611 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.09□□□□□ -2.08
VCANP13611 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VCANP13611 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VCANP13611 RNU6-1027P-201ENST00000383998 107 ntBASIC2.08□□□□□ -2.08
VCANP13611 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.08□□□□□ -2.08
VCANP13611 TRIM60P13-201ENST00000432350 1283 ntBASIC2.08□□□□□ -2.08
VCANP13611 PIGFP3-201ENST00000441918 722 ntBASIC2.08□□□□□ -2.08
VCANP13611 MTAPP1-201ENST00000489154 819 ntBASIC2.08□□□□□ -2.08
VCANP13611 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.08□□□□□ -2.08
VCANP13611 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
VCANP13611 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
VCANP13611 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
VCANP13611 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.08□□□□□ -2.08
VCANP13611 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.08□□□□□ -2.08
VCANP13611 AC234775.3-201ENST00000564612 656 ntBASIC2.08□□□□□ -2.08
VCANP13611 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.08□□□□□ -2.08
VCANP13611 RPS12P5-201ENST00000423449 371 ntBASIC2.07□□□□□ -2.08
VCANP13611 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.07□□□□□ -2.08
VCANP13611 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VCANP13611 AC019129.1-201ENST00000403786 261 ntBASIC2.07□□□□□ -2.08
VCANP13611 RPS27P29-201ENST00000463110 252 ntBASIC2.07□□□□□ -2.08
VCANP13611 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.07□□□□□ -2.08
VCANP13611 XKRY-201ENST00000510392 1100 ntBASIC2.07□□□□□ -2.08
VCANP13611 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.07□□□□□ -2.08
VCANP13611 OR10D4P-201ENST00000525892 951 ntBASIC2.07□□□□□ -2.08
VCANP13611 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.07□□□□□ -2.08
VCANP13611 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.07□□□□□ -2.08
VCANP13611 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.07□□□□□ -2.08
VCANP13611 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VCANP13611 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VCANP13611 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VCANP13611 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
VCANP13611 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms