Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC099522.1-202ENST00000514718 367 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 RNU6-390P-201ENST00000516259 103 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGB1P09429 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGB1P09429 OR5G4P-201ENST00000525251 760 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.95□□□□□ -1.62
HMGB1P09429 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HMGB1P09429 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.95□□□□□ -1.62
HMGB1P09429 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.95□□□□□ -1.62
HMGB1P09429 AC021171.1-201ENST00000603137 706 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 AL161729.3-201ENST00000603533 673 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 AL031667.3-201ENST00000620124 655 ntBASIC4.95□□□□□ -1.62
HMGB1P09429 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
HMGB1P09429 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HMGB1P09429 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.95□□□□□ -1.62
HMGB1P09429 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HMGB1P09429 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGB1P09429 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HMGB1P09429 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB1P09429 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB1P09429 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HMGB1P09429 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB1P09429 SPA17P1-201ENST00000416656 452 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 TRIM60P18-201ENST00000441518 828 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB1P09429 AC010099.1-201ENST00000455434 375 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 RPL21P8-201ENST00000465083 535 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC109327.1-201ENST00000471666 403 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.94□□□□□ -1.62
HMGB1P09429 AC072039.1-201ENST00000477611 581 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB1P09429 RNU6-928P-201ENST00000516876 104 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 IGHV3-76-201ENST00000522465 295 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC087276.1-201ENST00000529659 480 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC009643.1-201ENST00000532030 391 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB1P09429 TVP23BP1-201ENST00000557500 617 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC022968.1-201ENST00000567372 442 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB1P09429 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB1P09429 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.94□□□□□ -1.62
HMGB1P09429 MIR4277-201ENST00000578298 84 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC008745.1-201ENST00000604064 271 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC010133.1-201ENST00000615809 842 ntBASIC4.94□□□□□ -1.62
HMGB1P09429 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB1P09429 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.94□□□□□ -1.62
HMGB1P09429 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB1P09429 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 SAR1AP2-201ENST00000392696 594 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 RN7SKP159-201ENST00000410657 292 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 BTF3P10-201ENST00000433415 495 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGB1P09429 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 AP1S2P1-201ENST00000457344 379 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 RN7SL459P-201ENST00000481078 302 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 RPL7P24-201ENST00000493052 752 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 RNA5SP154-201ENST00000516193 111 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 EEF1A1P37-201ENST00000522748 715 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB1P09429 ACTR3BP3-201ENST00000565577 979 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 AC005951.1-201ENST00000576706 485 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB1P09429 GLUD1P4-201ENST00000590914 418 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 AC079395.3-201ENST00000615161 484 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 AC021755.4-201ENST00000616620 456 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HMGB1P09429 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB1P09429 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB1P09429 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB1P09429 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HMGB1P09429 AC233263.6-201ENST00000631132 1963 ntBASIC4.93□□□□□ -1.62
HMGB1P09429 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
HMGB1P09429 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.92□□□□□ -1.62
HMGB1P09429 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.92□□□□□ -1.62
HMGB1P09429 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HMGB1P09429 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HMGB1P09429 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HMGB1P09429 RNU6-223P-201ENST00000362830 107 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 RNU1-32P-201ENST00000363937 159 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HMGB1P09429 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HMGB1P09429 AC007066.1-201ENST00000392902 381 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 AC009237.5-201ENST00000414271 501 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 AC098592.1-201ENST00000419352 333 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 AC007919.1-201ENST00000429380 217 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 ELOCP8-201ENST00000439309 332 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 ELOCP15-201ENST00000442090 332 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.92□□□□□ -1.62
HMGB1P09429 HMGB3P22-202ENST00000451823 572 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 snoU13.28-201ENST00000459235 104 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 AC091167.1-201ENST00000492017 396 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.92□□□□□ -1.62
HMGB1P09429 LTV1P1-201ENST00000510683 1237 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.92□□□□□ -1.62
HMGB1P09429 MTATP6P15-201ENST00000527233 835 ntBASIC4.92□□□□□ -1.62
HMGB1P09429 HIGD1AP5-201ENST00000529959 259 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms