Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC4P09017 GAS5-AS1-201ENST00000602767 694 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC025811.1-201ENST00000604312 472 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC073387.2-201ENST00000604797 784 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC073569.3-201ENST00000619055 682 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AF117829.1-206ENST00000621883 3802 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC104985.3-201ENST00000623479 597 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 AC132825.7-201ENST00000638744 335 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 AC116096.1-201ENST00000566804 2314 ntBASIC3.05□□□□□ -1.92
HOXC4P09017 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
HOXC4P09017 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
HOXC4P09017 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXC4P09017 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXC4P09017 ZNF37BP-203ENST00000452306 1352 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC4P09017 OR5H2-201ENST00000355273 945 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXC4P09017 U6.112-201ENST00000384129 70 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 RNU6-1242P-201ENST00000391052 103 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC073264.1-201ENST00000411508 416 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC092638.1-201ENST00000411966 1275 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC005005.2-201ENST00000420779 380 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 AC092648.1-201ENST00000425870 423 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC4P09017 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 MTATP6P26-201ENST00000445926 662 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC140076.1-201ENST00000449897 361 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 BX248409.1-201ENST00000455497 255 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXC4P09017 RPS4XP6-201ENST00000477670 797 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC108860.1-201ENST00000484521 383 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC006483.1-201ENST00000487308 313 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 BOLA3P3-201ENST00000505182 232 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC119751.5-201ENST00000514077 770 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 SCARNA20.6-201ENST00000517251 106 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 MTCYBP41-201ENST00000528913 1123 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC023538.1-201ENST00000534576 736 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC4P09017 EIF5A2P1-201ENST00000564027 460 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 VN1R92P-201ENST00000598511 928 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC090425.2-201ENST00000608818 501 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXC4P09017 AC011330.2-201ENST00000621680 635 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 AC068620.4-201ENST00000636730 1182 ntBASIC3.04□□□□□ -1.92
HOXC4P09017 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC4P09017 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC4P09017 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
HOXC4P09017 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.03□□□□□ -1.92
HOXC4P09017 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC4P09017 AL355578.1-201ENST00000607405 1328 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HOXC4P09017 MIR22-201ENST00000362190 85 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 RNU6-1151P-201ENST00000384684 107 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 RNU6-906P-201ENST00000384700 70 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HOXC4P09017 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC4P09017 AL121972.1-201ENST00000402023 252 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 SFR1P1-201ENST00000403720 688 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AL583834.1-201ENST00000406943 343 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.03□□□□□ -1.92
HOXC4P09017 HIGD1AP15-201ENST00000416198 280 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 RPS3AP9-201ENST00000417027 792 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 MTCO2P21-201ENST00000419780 677 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 USP9YP21-201ENST00000420603 432 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC4P09017 RPL35AP12-201ENST00000425362 338 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC4P09017 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC4P09017 RPL36P19-201ENST00000430744 301 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 RPS12P18-201ENST00000442381 270 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AL358794.1-201ENST00000445689 381 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 NANOGNBP1-201ENST00000448444 480 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 NF1P3-201ENST00000457709 450 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC4P09017 RPS3AP14-201ENST00000483907 780 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AC134050.1-201ENST00000495088 933 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC4P09017 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC4P09017 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC4P09017 RNA5SP217-201ENST00000515959 91 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 AC104027.1-201ENST00000521887 300 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HOXC4P09017 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC4P09017 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC4P09017 AC008507.1-201ENST00000587506 734 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 OR4G1P-201ENST00000588632 938 ntBASIC3.03□□□□□ -1.92
HOXC4P09017 VN1R88P-201ENST00000596787 292 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms