Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL3A1P02461 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL3A1P02461 AC007342.7-201ENST00000624610 2337 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.56□□□□□ -1.68
COL3A1P02461 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL3A1P02461 RNA5SP72-201ENST00000364442 117 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 Y_RNA.554-201ENST00000384672 102 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 FGF7P8-201ENST00000402994 292 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 BX323014.1-201ENST00000412876 237 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 GLRXP1-201ENST00000423261 334 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.56□□□□□ -1.68
COL3A1P02461 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.56□□□□□ -1.68
COL3A1P02461 AC010307.1-201ENST00000467206 836 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.56□□□□□ -1.68
COL3A1P02461 AC023424.2-201ENST00000493479 777 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.56□□□□□ -1.68
COL3A1P02461 HSPE1P23-201ENST00000509838 286 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC109445.1-201ENST00000512356 383 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC008837.2-201ENST00000513076 418 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 NARSP2-201ENST00000518524 679 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL3A1P02461 AL121839.1-201ENST00000556233 1185 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AL157700.1-201ENST00000561973 1432 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC009063.1-201ENST00000563342 702 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 MTCO3P13-201ENST00000577757 781 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 MIR4738-201ENST00000579134 87 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC090616.5-202ENST00000582111 297 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AC005730.3-201ENST00000583067 366 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 MIR5195-201ENST00000583555 115 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 AL589743.7-201ENST00000612637 233 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 MIR7844-201ENST00000616161 122 ntBASIC4.56□□□□□ -1.68
COL3A1P02461 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.56□□□□□ -1.68
COL3A1P02461 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL3A1P02461 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL3A1P02461 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.55□□□□□ -1.68
COL3A1P02461 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.55□□□□□ -1.68
COL3A1P02461 AC073055.1-201ENST00000456901 1621 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.55□□□□□ -1.68
COL3A1P02461 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL3A1P02461 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL3A1P02461 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL3A1P02461 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.55□□□□□ -1.68
COL3A1P02461 RNA5SP27-201ENST00000363839 119 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 RNA5SP235-201ENST00000365411 114 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 SNORD115-47-201ENST00000391226 86 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 LAP3P1-201ENST00000403648 294 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 RN7SKP285-201ENST00000410137 318 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.55□□□□□ -1.68
COL3A1P02461 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.55□□□□□ -1.68
COL3A1P02461 NPM1P24-201ENST00000428039 894 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 HMGB1P31-201ENST00000437242 427 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.55□□□□□ -1.68
COL3A1P02461 AL662791.1-201ENST00000441992 928 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.55□□□□□ -1.68
COL3A1P02461 RNU7-140P-201ENST00000459546 60 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 KLF3P2-201ENST00000465138 268 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AL121769.1-201ENST00000469473 401 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AC026427.2-201ENST00000506228 536 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AC079395.1-201ENST00000510981 262 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL3A1P02461 RN7SKP298-201ENST00000515950 94 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 RNU6-507P-201ENST00000516045 100 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.55□□□□□ -1.68
COL3A1P02461 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.55□□□□□ -1.68
COL3A1P02461 MIR4276-201ENST00000584832 70 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AC005000.2-201ENST00000605468 310 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 AL136981.2-201ENST00000617319 734 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL3A1P02461 MIR3651-201ENST00000630427 90 ntBASIC4.55□□□□□ -1.68
COL3A1P02461 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.55□□□□□ -1.68
COL3A1P02461 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 AC093849.1-201ENST00000563631 2209 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.54□□□□□ -1.68
COL3A1P02461 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 RNA5SP50-201ENST00000363731 107 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 OR1L1-202ENST00000373686 1083 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 NCSTNP1-201ENST00000406229 144 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 RPL26P37-201ENST00000411983 438 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 AL158156.1-201ENST00000422509 473 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 GTF2IP23-201ENST00000423746 351 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.54□□□□□ -1.68
COL3A1P02461 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.54□□□□□ -1.68
COL3A1P02461 MRPS18BP2-201ENST00000434310 759 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.54□□□□□ -1.68
COL3A1P02461 AC092170.1-201ENST00000440211 356 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC002542.1-201ENST00000440683 193 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AL353898.1-201ENST00000444055 238 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL3A1P02461 MTCO3P11-201ENST00000455103 774 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.54□□□□□ -1.68
COL3A1P02461 FAM92A1P2-202ENST00000504766 877 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms