Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 ZYXP1-201ENST00000617638 118 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC019278.1-201ENST00000623516 479 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AL159972.1-201ENST00000625150 448 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AC010300.1-201ENST00000600671 5134 ntBASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC87Q9NVE4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 Z95327.2-201ENST00000414579 1873 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RNU5A-8P-201ENST00000364102 114 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 SNORD82-201ENST00000365530 70 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AL359837.1-201ENST00000381357 287 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 SNORA70C-201ENST00000384538 135 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RNU6-603P-201ENST00000411403 107 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AL353678.1-201ENST00000422735 741 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 MTCO2P12-201ENST00000427426 682 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AL356276.2-201ENST00000435919 558 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC105402.2-201ENST00000438503 358 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 H2AFZP5-201ENST00000446960 382 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC239809.1-201ENST00000450470 217 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 NANOGP10-201ENST00000453325 895 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 MTND1P9-201ENST00000453775 944 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC104308.1-201ENST00000454621 333 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RPL23AP24-201ENST00000458203 385 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AL049714.1-201ENST00000466686 347 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RPL36AP41-201ENST00000493820 306 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC015795.1-201ENST00000513669 327 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RNU6-277P-201ENST00000516272 106 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 HPRT1P3-201ENST00000539521 576 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC092470.1-201ENST00000546187 132 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC124068.1-201ENST00000563131 678 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 GLUD1P4-201ENST00000590914 418 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC005858.4-201ENST00000623191 700 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 AC015813.6-201ENST00000624409 5808 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 MTND4P35-201ENST00000604257 1375 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.03□□□□□ -1.44
CCDC87Q9NVE4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC87Q9NVE4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 OR14L1P-202ENST00000641545 3009 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC009643.2-201ENST00000603543 1448 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 ZFRP1-201ENST00000457579 2970 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 ZNF137P-201ENST00000456718 1920 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC063976.2-201ENST00000425667 3556 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 OR1S2-201ENST00000302592 978 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.58-201ENST00000362807 102 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.154-201ENST00000363624 102 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 RNY3P1-201ENST00000365085 102 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 RNY3-201ENST00000365484 102 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 SNORA5.1-201ENST00000384275 131 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 Y_RNA.490-201ENST00000384413 102 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AL451139.1-201ENST00000434718 346 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 MTCYBP6-201ENST00000441810 138 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 MIR2116-201ENST00000517221 80 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC107953.1-201ENST00000522216 297 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC034229.5-201ENST00000624258 185 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 AC090617.10-201ENST00000624308 134 ntBASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC87Q9NVE4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms