Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RN7SL703P-201ENST00000578485 302 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MAGOH2P-202ENST00000584384 429 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC012669.1-201ENST00000603209 283 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC009974.1-201ENST00000608881 455 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC025588.4-201ENST00000615802 908 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AP001002.2-201ENST00000625137 386 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL390862.1-201ENST00000635467 1469 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC073073.2-201ENST00000609827 2578 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MTND5P27-201ENST00000428871 1720 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL079343.1-201ENST00000572358 1771 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 SRP72P2-201ENST00000344851 1979 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RPL7P26-201ENST00000333817 754 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 SNORD46.1-201ENST00000364139 104 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RNU6-621P-201ENST00000364752 109 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 Y_RNA.311-201ENST00000365068 96 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AP002088.1-201ENST00000382740 395 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RNU6-1242P-201ENST00000391052 103 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 HMGB1P17-201ENST00000403495 628 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RNA5SP44-201ENST00000410446 133 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RPS7P13-201ENST00000413955 498 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 GOT2P5-201ENST00000433995 546 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 BX679664.1-201ENST00000434429 253 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 FTH1P1-201ENST00000437933 532 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC125238.1-201ENST00000448842 249 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC006480.1-201ENST00000449887 378 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RPL26P28-201ENST00000451325 435 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RPL21P134-201ENST00000453468 483 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 MTCO3P11-201ENST00000455103 774 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AP001992.1-205ENST00000462248 379 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC004062.1-201ENST00000509926 645 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC116353.3-201ENST00000511215 249 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC093853.1-201ENST00000515689 483 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC008489.1-201ENST00000524271 483 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 BNIP3P11-201ENST00000603878 563 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC009220.3-201ENST00000604318 586 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 SNORA62.6-201ENST00000606322 83 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC027449.1-201ENST00000608890 407 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC244100.1-202ENST00000621554 382 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC004777.1-201ENST00000624317 287 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC097714.1-201ENST00000511272 1647 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 AC110774.1-201ENST00000623567 2018 ntBASIC3.32□□□□□ -1.88
DDX28Q9NUL7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
DDX28Q9NUL7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC002546.1-201ENST00000588041 2504 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 SNORA73.2-201ENST00000364946 201 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 RNU6-805P-201ENST00000365643 106 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC069157.1-201ENST00000421749 137 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC019178.2-201ENST00000423595 505 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 DPPA2P1-201ENST00000428060 556 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AL590233.1-201ENST00000430017 456 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 HSPE1P28-201ENST00000443139 211 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 PTENP1-201ENST00000447117 1215 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC005297.2-201ENST00000450430 606 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 HMGB1P15-201ENST00000453854 435 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 MTND1P16-201ENST00000465177 898 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 COX7A2P2-201ENST00000505291 250 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 XKRY-201ENST00000510392 1100 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 RNU6-1095P-201ENST00000516148 108 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 MTND2P32-201ENST00000521584 1038 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC022861.1-201ENST00000522981 663 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AL512347.1-201ENST00000566420 503 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 SNORD84-203ENST00000584275 78 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AC015726.1-201ENST00000602353 681 ntBASIC3.31□□□□□ -1.88
DDX28Q9NUL7 AL133393.1-201ENST00000603277 287 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms