Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC073387.2-201ENST00000604797 784 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AL590240.3-201ENST00000621416 943 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC004777.1-201ENST00000624317 287 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC091925.2-201ENST00000625059 256 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 MKKS-204ENST00000639674 192 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AP005901.5-201ENST00000545779 1796 ntBASIC3.28□□□□□ -1.89
VPS35Q96QK1 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
VPS35Q96QK1 MTND4P34-201ENST00000572715 1371 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 RNU1-70P-201ENST00000362618 164 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 RNA5SP295-201ENST00000362655 121 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 RNU6-224P-201ENST00000384055 107 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC012497.1-201ENST00000429392 575 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 BX679664.1-201ENST00000434429 253 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 GTF2IP7-202ENST00000436677 309 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 snoU109.4-201ENST00000458953 143 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 RPS4XP10-201ENST00000465034 731 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC034236.1-201ENST00000469891 373 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 RPL7P38-201ENST00000488396 739 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 OR4G11P-201ENST00000492842 939 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC114967.1-201ENST00000504890 259 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 HSPD1P15-201ENST00000505573 1122 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC010460.2-201ENST00000509054 677 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC093752.1-206ENST00000511823 336 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 RNU6-1261P-201ENST00000517194 104 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC068657.1-201ENST00000520807 306 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 AP001636.2-201ENST00000525517 696 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 GTF2IP8-201ENST00000560687 584 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC112220.2-201ENST00000605513 533 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AC018645.2-201ENST00000609151 472 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AL157817.1-201ENST00000614264 790 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 AL360181.4-201ENST00000621752 134 ntBASIC3.27□□□□□ -1.89
VPS35Q96QK1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
VPS35Q96QK1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS35Q96QK1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS35Q96QK1 FAM35CP-201ENST00000554755 2470 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 Y_RNA.25-201ENST00000362528 102 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS35Q96QK1 RNVU1-14-201ENST00000384770 164 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 MIR506-201ENST00000384998 124 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 U3.19-201ENST00000390893 196 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC099677.1-201ENST00000420575 175 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC079780.1-201ENST00000428259 207 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC005300.1-201ENST00000428401 373 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 PNPLA4P1-201ENST00000458328 305 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC092754.2-201ENST00000463506 460 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS35Q96QK1 RPL7P49-201ENST00000471402 708 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC069528.1-202ENST00000482888 637 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC021678.1-201ENST00000505195 936 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC026412.2-201ENST00000512270 1075 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 FABP5P12-201ENST00000515543 389 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 LRRC6P1-201ENST00000532188 885 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC125611.1-201ENST00000549563 229 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC010198.2-201ENST00000550612 259 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 SNORD84-203ENST00000584275 78 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AL606834.3-201ENST00000602615 496 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AL035411.2-201ENST00000604022 421 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC010738.1-201ENST00000604970 987 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 uc_338.1-201ENST00000612113 180 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC009464.1-201ENST00000615731 469 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 AC010872.1-201ENST00000624225 675 ntBASIC3.26□□□□□ -1.89
VPS35Q96QK1 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS35Q96QK1 MTND5P7-201ENST00000413558 1798 ntBASIC3.25□□□□□ -1.89
VPS35Q96QK1 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS35Q96QK1 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms