Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC090337.1-201ENST00000579651 2074 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC092070.2-203ENST00000598377 3644 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC004076.2-201ENST00000620532 3323 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AL356489.2-201ENST00000566968 3528 ntBASIC4.42□□□□□ -1.7
CCDC140Q96MF4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC140Q96MF4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 MIR375-201ENST00000362103 64 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 SNORA64.1-201ENST00000362600 132 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNU6-266P-201ENST00000364225 107 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNA5SP30-201ENST00000365552 115 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNU6-214P-201ENST00000384130 107 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNU6-1160P-201ENST00000384546 104 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 MIR514A1-201ENST00000385133 98 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 DUTP5-201ENST00000406790 469 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RN7SKP114-201ENST00000410327 279 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNU6-954P-201ENST00000411355 107 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RPL7P37-201ENST00000425095 738 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 FABP7P2-201ENST00000429946 379 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 KNOP1P3-201ENST00000446933 426 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC091685.2-201ENST00000454924 864 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 ELOCP24-201ENST00000456370 334 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC025164.1-201ENST00000496249 478 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC024558.1-201ENST00000505008 528 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC093815.1-201ENST00000508637 280 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RNU6-927P-201ENST00000516199 100 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC087854.1-201ENST00000519706 414 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC090151.1-201ENST00000520784 730 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC022884.2-201ENST00000578535 580 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC008737.2-201ENST00000599446 118 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AL355802.3-201ENST00000607571 545 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC133104.2-201ENST00000615272 193 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RN7SL544P-201ENST00000617232 284 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RN7SL763P-201ENST00000620922 284 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC139713.2-214ENST00000642059 1811 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 IRF5P1-201ENST00000504852 2164 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 AC074029.4-201ENST00000624796 1859 ntBASIC4.41□□□□□ -1.7
CCDC140Q96MF4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
CCDC140Q96MF4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 AC022893.2-201ENST00000564832 3296 ntBASIC4.4□□□□□ -1.7
CCDC140Q96MF4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC140Q96MF4 RNA5SP326-201ENST00000363209 110 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.395-201ENST00000383945 109 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RNU6-306P-201ENST00000384617 107 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RPS3AP2-201ENST00000407190 754 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RPS27P18-201ENST00000431701 247 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms