Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL121772.2-201ENST00000614331 297 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC023158.2-201ENST00000614876 543 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU1-68P-201ENST00000615382 146 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC009318.4-201ENST00000620496 486 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 U1.39-201ENST00000621562 146 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC073348.1-201ENST00000623002 331 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC006963.1-201ENST00000624003 1052 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC010608.3-201ENST00000625048 527 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AP003485.1-201ENST00000625093 753 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 CR381572.1-201ENST00000625098 102 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC092435.3-201ENST00000565538 3654 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 U3.6-201ENST00000363622 211 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNU4-51P-201ENST00000364206 140 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP515-201ENST00000364570 118 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNU6-1300P-201ENST00000391046 108 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNU4-65P-201ENST00000410473 140 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC013410.2-201ENST00000422627 201 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC093151.1-201ENST00000427711 313 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AL445584.1-201ENST00000431451 330 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RPL23AP16-201ENST00000441715 421 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC010285.1-201ENST00000470580 392 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC025518.1-201ENST00000479856 347 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC093278.1-201ENST00000494700 600 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC110794.1-201ENST00000505816 425 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 SCARNA20.6-201ENST00000517251 106 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC026403.1-201ENST00000518938 295 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 OR5B10P-201ENST00000532869 642 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC084824.1-201ENST00000550917 1005 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 HIGD1AP1-201ENST00000550979 275 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC138915.2-201ENST00000569776 97 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 MTND3P13-201ENST00000574391 343 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 MIR5186-201ENST00000577504 120 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC073387.2-201ENST00000604797 784 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC112220.2-201ENST00000605513 533 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC092954.1-201ENST00000609121 445 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNU6-1192P-201ENST00000612197 107 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 RNU6-489P-201ENST00000618289 107 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC068831.8-201ENST00000620171 435 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AL034408.1-202ENST00000636088 415 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AP002907.1-201ENST00000606361 1430 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 AL035425.3-201ENST00000564206 4996 ntBASIC2.81□□□□□ -1.96
CCDC54Q8NEL0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 HMGB1P5-201ENST00000255320 642 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNU1-70P-201ENST00000362618 164 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP258-201ENST00000362750 119 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNU6-492P-201ENST00000363035 104 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNU1-64P-201ENST00000365443 163 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 MT-TC-201ENST00000387405 66 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 SNORA26.7-201ENST00000391288 122 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RPS3AP26-201ENST00000398259 784 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL023807.1-201ENST00000407932 359 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNU6-1077P-201ENST00000410506 102 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP344-201ENST00000411081 104 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RAB9AP3-201ENST00000412737 573 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 RPS7P15-201ENST00000415804 584 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 OR4K6P-201ENST00000416478 897 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 MTCO3P1-205ENST00000422088 832 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 MTCO1P3-201ENST00000429327 192 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC018644.1-201ENST00000429934 551 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 SEPT7P5-201ENST00000434048 306 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 NANOGP2-201ENST00000435391 727 ntBASIC2.8□□□□□ -1.96
CCDC54Q8NEL0 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms