Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 METTL21EP-201ENST00000298105 713 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 MIR1287-201ENST00000408492 90 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 FNDC3CP-201ENST00000420795 1155 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 MTND5P4-201ENST00000514978 288 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.85□□□□□ -2.11
USF3Q68DE3 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC1.85□□□□□ -2.11
USF3Q68DE3 AC009831.4-201ENST00000620744 325 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC1.85□□□□□ -2.11
USF3Q68DE3 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USF3Q68DE3 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USF3Q68DE3 AL356292.1-201ENST00000283110 373 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
USF3Q68DE3 AC007677.1-201ENST00000445757 515 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC1.85□□□□□ -2.11
USF3Q68DE3 RPL7P5-201ENST00000471472 736 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 AC072039.1-201ENST00000477611 581 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 AC135999.1-201ENST00000478962 479 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 TRAV31-201ENST00000502780 342 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 AC090071.1-201ENST00000507713 644 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 CCNHP1-201ENST00000513311 678 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC1.85□□□□□ -2.11
USF3Q68DE3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC1.85□□□□□ -2.11
USF3Q68DE3 AC135628.1-201ENST00000568867 534 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 AC005951.1-201ENST00000576706 485 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 AP000942.3-201ENST00000603702 160 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC1.85□□□□□ -2.11
USF3Q68DE3 AL160394.1-201ENST00000624765 724 ntBASIC1.85□□□□□ -2.11
USF3Q68DE3 ZNF720P1-201ENST00000562403 1939 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.84□□□□□ -2.11
USF3Q68DE3 Z99496.1-201ENST00000469424 1477 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USF3Q68DE3 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
USF3Q68DE3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
USF3Q68DE3 RNA5SP456-201ENST00000364002 114 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.84□□□□□ -2.11
USF3Q68DE3 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.84□□□□□ -2.11
USF3Q68DE3 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.84□□□□□ -2.11
USF3Q68DE3 AC005517.2-201ENST00000424673 553 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 NEK4P1-201ENST00000433383 879 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.84□□□□□ -2.11
USF3Q68DE3 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
USF3Q68DE3 GNAI2P1-201ENST00000541815 315 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.84□□□□□ -2.11
USF3Q68DE3 AL451074.6-201ENST00000608512 729 ntBASIC1.84□□□□□ -2.11
USF3Q68DE3 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
USF3Q68DE3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
USF3Q68DE3 DCAF13P3-201ENST00000561147 1334 ntBASIC1.84□□□□□ -2.12
USF3Q68DE3 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
USF3Q68DE3 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.83□□□□□ -2.12
USF3Q68DE3 U3.37-201ENST00000408528 213 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 HMGB1P11-201ENST00000413899 637 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.83□□□□□ -2.12
USF3Q68DE3 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.83□□□□□ -2.12
USF3Q68DE3 AC098799.2-201ENST00000509466 868 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC1.83□□□□□ -2.12
USF3Q68DE3 MTCYBP20-201ENST00000524239 1129 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC103710.1-201ENST00000610003 901 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.83□□□□□ -2.12
USF3Q68DE3 AC004925.1-201ENST00000624256 2706 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.83□□□□□ -2.12
USF3Q68DE3 USP44-208ENST00000552440 1818 ntTSL 5 BASIC1.83□□□□□ -2.12
USF3Q68DE3 RNU1-17P-201ENST00000363022 152 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 USP9YP27-201ENST00000418455 438 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC1.83□□□□□ -2.12
USF3Q68DE3 HMGB3P10-201ENST00000434734 572 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.83□□□□□ -2.12
USF3Q68DE3 AL035551.1-201ENST00000446931 348 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC087190.1-201ENST00000484462 480 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.83□□□□□ -2.12
USF3Q68DE3 SCARNA16.3-201ENST00000516595 184 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.83□□□□□ -2.12
USF3Q68DE3 AL049779.4-201ENST00000604500 156 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 AC011890.2-201ENST00000613393 294 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USF3Q68DE3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC1.83□□□□□ -2.12
USF3Q68DE3 AC244517.1-201ENST00000606030 2086 ntBASIC1.83□□□□□ -2.12
USF3Q68DE3 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.82□□□□□ -2.12
USF3Q68DE3 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 Y_RNA.338-201ENST00000365320 114 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.82□□□□□ -2.12
USF3Q68DE3 AC048351.1-201ENST00000420064 602 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC1.82□□□□□ -2.12
USF3Q68DE3 AC108729.3-201ENST00000513484 108 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 RPL23AP78-201ENST00000599928 470 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USF3Q68DE3 MIR583-201ENST00000384846 75 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 SNORA48.3-201ENST00000391081 134 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 SNORA26.9-201ENST00000391322 122 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 CYCSP49-201ENST00000420810 319 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 AC013410.1-201ENST00000436223 1232 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 AC090543.1-201ENST00000492168 485 ntBASIC1.82□□□□□ -2.12
USF3Q68DE3 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms