Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC117529.2-201ENST00000512159 2068 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RNU6-1042P-201ENST00000384204 107 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RPL23AP48-201ENST00000406913 488 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RN7SKP56-201ENST00000410513 331 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RNU2-66P-201ENST00000410650 161 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RPL17P12-201ENST00000413391 526 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RPL21P32-201ENST00000419877 477 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL389915.1-201ENST00000422463 466 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 OR2B8P-201ENST00000432841 938 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL831737.1-201ENST00000441288 271 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 RANP8-201ENST00000444720 713 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL590399.6-201ENST00000446396 307 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 MTND2P33-201ENST00000506452 1031 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 HIGD1AP3-201ENST00000515857 278 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 VN1R85P-201ENST00000601587 426 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL020997.2-201ENST00000602607 184 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 U6atac.1-201ENST00000616025 117 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC116165.2-201ENST00000616705 206 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AL356596.1-201ENST00000624230 379 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC068137.3-201ENST00000639191 341 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 AC073869.6-201ENST00000640656 341 ntBASIC4.7□□□□□ -1.66
VPS53Q5VIR6 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 MTND5P3-201ENST00000438536 1800 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RNU2-28P-201ENST00000410457 189 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RN7SKP263-201ENST00000411194 309 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RPL7AP73-201ENST00000413490 353 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC083875.1-201ENST00000419509 405 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC010975.2-201ENST00000427781 588 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RPS29P7-201ENST00000439662 171 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RPS17P13-201ENST00000448974 407 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RPL9P33-201ENST00000484311 566 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC026402.1-201ENST00000513642 170 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 RNU4-60P-201ENST00000517239 135 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC134698.4-201ENST00000523451 826 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 OR4A45P-201ENST00000529954 901 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AL389895.1-201ENST00000554127 252 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 SULT1C2P1-202ENST00000562418 459 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC053481.4-201ENST00000583164 216 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AL606490.9-201ENST00000603331 271 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC108747.1-201ENST00000609508 535 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC068944.2-201ENST00000610373 403 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC024941.1-201ENST00000612250 334 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC008498.1-201ENST00000613012 531 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AL357080.1-201ENST00000617394 239 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AC231657.1-201ENST00000624313 397 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AL160394.1-201ENST00000624765 724 ntBASIC4.69□□□□□ -1.66
VPS53Q5VIR6 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS53Q5VIR6 AL031985.3-201ENST00000565390 2449 ntBASIC4.68□□□□□ -1.66
VPS53Q5VIR6 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS53Q5VIR6 Y_RNA.41-201ENST00000362646 102 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms