Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.91□□□□□ -1.78
COL28A1Q2UY09 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL28A1Q2UY09 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.9□□□□□ -1.78
COL28A1Q2UY09 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL28A1Q2UY09 NOL8P1-201ENST00000508336 3529 ntBASIC3.9□□□□□ -1.78
COL28A1Q2UY09 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.9□□□□□ -1.78
COL28A1Q2UY09 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 U8.11-201ENST00000384699 133 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 U8.12-201ENST00000384701 133 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 MIR3074-201ENST00000384885 81 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RPL21P17-201ENST00000397467 475 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 MIR1305-201ENST00000408300 86 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RN7SKP56-201ENST00000410513 331 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RNA5SP306-201ENST00000411087 107 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AL161631.1-201ENST00000417933 486 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RBMY1KP-201ENST00000423480 476 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 SDCBPP1-201ENST00000440192 890 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC002381.1-201ENST00000447049 280 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 PAXBP1P1-201ENST00000449315 447 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RPL23AP81-201ENST00000455252 467 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 BX510359.1-201ENST00000456973 237 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 U8.18-201ENST00000459285 133 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 OR9M1P-201ENST00000459641 921 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC012170.1-201ENST00000495139 359 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 POU5F1P7-201ENST00000508759 541 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 TXNP6-201ENST00000510190 310 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RNU6-27P-201ENST00000516146 107 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 OR5AP1P-201ENST00000529730 940 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 GTF2IP22-201ENST00000554443 182 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC090616.5-202ENST00000582111 297 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 MTCYBP22-201ENST00000603788 447 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC112187.2-201ENST00000604345 283 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC114878.2-201ENST00000604863 1251 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 AC009039.2-201ENST00000624524 529 ntBASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL28A1Q2UY09 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 RNU6-28P-201ENST00000362378 107 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 RNU6-660P-201ENST00000364566 109 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 Y_RNA.560-201ENST00000384689 102 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 SKINT1L-201ENST00000401057 817 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 RPS23P10-201ENST00000416185 486 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 PRELID3BP10-201ENST00000431957 584 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 UBE2D3P4-201ENST00000441973 436 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 HMGB1P25-201ENST00000468402 607 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC106872.3-201ENST00000495104 446 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC104164.2-201ENST00000496953 495 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC022447.3-201ENST00000506865 495 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 RNA5SP73-201ENST00000516744 108 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 RN7SKP57-201ENST00000517248 293 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.89□□□□□ -1.79
COL28A1Q2UY09 AC010620.1-201ENST00000601088 1102 ntBASIC3.89□□□□□ -1.79
COL28A1Q2UY09 BBIP1P1-201ENST00000602999 279 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms