Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC055876.1-202ENST00000567053 138 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 HMGB1P6-201ENST00000569046 646 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC015912.2-201ENST00000571053 181 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC005261.5-201ENST00000596280 355 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC007038.2-201ENST00000608095 740 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 uc_338.12-201ENST00000616344 181 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL354950.2-201ENST00000617939 290 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AP001005.3-201ENST00000622049 129 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC040168.1-201ENST00000623594 991 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC138649.5-201ENST00000637456 137 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL596275.2-204ENST00000641628 552 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL596275.2-206ENST00000641957 626 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 STX3-208ENST00000641815 3236 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC107027.3-201ENST00000565095 3473 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 MFSD8-216ENST00000641147 4009 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC021146.4-201ENST00000309229 279 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXA4Q00056 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 RPL7P26-201ENST00000333817 754 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 RNU5E-8P-201ENST00000363502 116 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 Y_RNA.356-201ENST00000365475 113 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
HOXA4Q00056 RNU6-39P-201ENST00000384344 107 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL133270.1-201ENST00000402635 279 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA4Q00056 CYCSP10-201ENST00000417973 294 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC137499.1-201ENST00000427602 88 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC016831.4-201ENST00000438302 307 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC093019.1-201ENST00000443135 252 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC011753.3-201ENST00000443436 406 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 CACYBPP2-201ENST00000453625 678 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 RNU6-261P-201ENST00000459506 102 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC233702.1-201ENST00000482905 502 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
HOXA4Q00056 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA4Q00056 PCBP2P3-201ENST00000509726 843 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC114797.1-201ENST00000514003 728 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 RN7SL435P-201ENST00000584418 282 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 DHX40P1-201ENST00000588725 1412 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 GLUD1P4-201ENST00000590914 418 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AC103710.2-201ENST00000609912 942 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 DISC2.1-201ENST00000612827 205 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AC112487.2-201ENST00000637950 304 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA4Q00056 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA4Q00056 AL451142.2-201ENST00000429076 2090 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA4Q00056 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 AL138713.1-201ENST00000624026 2130 ntBASIC3.91□□□□□ -1.78
HOXA4Q00056 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA4Q00056 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXA4Q00056 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXA4Q00056 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA4Q00056 SDAD1P1-202ENST00000524156 2051 ntBASIC3.9□□□□□ -1.78
HOXA4Q00056 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA4Q00056 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
HOXA4Q00056 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC3.9□□□□□ -1.78
HOXA4Q00056 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms