Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.31□□□□□ -1.72
CTCFP49711 AC110741.2-201ENST00000605278 268 ntBASIC4.31□□□□□ -1.72
CTCFP49711 AL158042.1-201ENST00000605338 460 ntBASIC4.31□□□□□ -1.72
CTCFP49711 AL450489.1-201ENST00000612071 468 ntBASIC4.31□□□□□ -1.72
CTCFP49711 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CTCFP49711 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CTCFP49711 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CTCFP49711 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CTCFP49711 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
CTCFP49711 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CTCFP49711 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
CTCFP49711 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CTCFP49711 SNRPEP3-201ENST00000338402 276 ntBASIC4.3□□□□□ -1.72
CTCFP49711 SNORA51.6-201ENST00000384151 125 ntBASIC4.3□□□□□ -1.72
CTCFP49711 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.3□□□□□ -1.72
CTCFP49711 MTND1P31-201ENST00000449206 961 ntBASIC4.3□□□□□ -1.72
CTCFP49711 TRGVB-201ENST00000453257 471 ntBASIC4.3□□□□□ -1.72
CTCFP49711 ANKRD26P4-201ENST00000455755 950 ntBASIC4.3□□□□□ -1.72
CTCFP49711 RPS20P32-201ENST00000456044 356 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC004263.1-201ENST00000479327 332 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.3□□□□□ -1.72
CTCFP49711 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.3□□□□□ -1.72
CTCFP49711 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.3□□□□□ -1.72
CTCFP49711 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.3□□□□□ -1.72
CTCFP49711 AC079171.1-201ENST00000568788 914 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC006270.2-201ENST00000578523 652 ntBASIC4.3□□□□□ -1.72
CTCFP49711 MIR5004-201ENST00000579078 107 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC090616.5-202ENST00000582111 297 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 AL033523.1-201ENST00000605153 153 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 AC092650.2-201ENST00000619984 902 ntBASIC4.3□□□□□ -1.72
CTCFP49711 AC017037.3-201ENST00000625016 472 ntBASIC4.3□□□□□ -1.72
CTCFP49711 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.3□□□□□ -1.72
CTCFP49711 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CTCFP49711 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CTCFP49711 AC007823.1-201ENST00000569932 1566 ntBASIC4.3□□□□□ -1.72
CTCFP49711 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTCFP49711 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTCFP49711 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTCFP49711 AL359893.1-201ENST00000447628 1580 ntBASIC4.29□□□□□ -1.72
CTCFP49711 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTCFP49711 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.29□□□□□ -1.72
CTCFP49711 AL355379.1-201ENST00000405542 640 ntBASIC4.29□□□□□ -1.72
CTCFP49711 VN1R10P-201ENST00000447106 875 ntBASIC4.29□□□□□ -1.72
CTCFP49711 MTCYBP11-201ENST00000447254 1109 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 VN1R40P-201ENST00000455196 941 ntBASIC4.29□□□□□ -1.72
CTCFP49711 RPL18AP17-201ENST00000455326 198 ntBASIC4.29□□□□□ -1.72
CTCFP49711 MTCO2P6-201ENST00000463134 685 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AC092757.1-201ENST00000467293 467 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.29□□□□□ -1.72
CTCFP49711 YWHAEP4-201ENST00000505390 198 ntBASIC4.29□□□□□ -1.72
CTCFP49711 USP9YP5-201ENST00000511770 630 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 RNU2-58P-201ENST00000516403 183 ntBASIC4.29□□□□□ -1.72
CTCFP49711 RANP9-201ENST00000519957 271 ntBASIC4.29□□□□□ -1.72
CTCFP49711 OR4R3P-201ENST00000525084 838 ntBASIC4.29□□□□□ -1.72
CTCFP49711 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 AC009712.1-201ENST00000564938 316 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.29□□□□□ -1.72
CTCFP49711 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 LARP7P2-201ENST00000575306 125 ntBASIC4.29□□□□□ -1.72
CTCFP49711 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.29□□□□□ -1.72
CTCFP49711 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.29□□□□□ -1.72
CTCFP49711 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.29□□□□□ -1.72
CTCFP49711 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTCFP49711 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.28□□□□□ -1.72
CTCFP49711 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.28□□□□□ -1.72
CTCFP49711 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CTCFP49711 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.28□□□□□ -1.72
CTCFP49711 EI24P1-201ENST00000416584 867 ntBASIC4.28□□□□□ -1.72
CTCFP49711 MTCYBP24-201ENST00000420387 1106 ntBASIC4.28□□□□□ -1.72
CTCFP49711 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.28□□□□□ -1.72
CTCFP49711 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.28□□□□□ -1.72
CTCFP49711 ATP5JP1-201ENST00000431631 322 ntBASIC4.28□□□□□ -1.72
CTCFP49711 RANP8-201ENST00000444720 713 ntBASIC4.28□□□□□ -1.72
CTCFP49711 ANP32BP2-201ENST00000454525 545 ntBASIC4.28□□□□□ -1.72
CTCFP49711 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.28□□□□□ -1.72
CTCFP49711 AC105185.1-201ENST00000518705 535 ntBASIC4.28□□□□□ -1.72
CTCFP49711 MTATP6P15-201ENST00000527233 835 ntBASIC4.28□□□□□ -1.72
CTCFP49711 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms