Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL136372.1-201ENST00000403060 228 ntBASIC3.29□□□□□ -1.88
CDX1P47902 MIR1179-201ENST00000408703 91 ntBASIC3.29□□□□□ -1.88
CDX1P47902 RN7SKP266-201ENST00000410232 287 ntBASIC3.29□□□□□ -1.88
CDX1P47902 RNU4-65P-201ENST00000410473 140 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.29□□□□□ -1.88
CDX1P47902 COX6B1P7-201ENST00000430845 235 ntBASIC3.29□□□□□ -1.88
CDX1P47902 OR4K11P-201ENST00000431829 904 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC024082.2-201ENST00000434771 238 ntBASIC3.29□□□□□ -1.88
CDX1P47902 UBE2FP3-201ENST00000436366 524 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 ATG12P2-201ENST00000456830 416 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC034222.1-201ENST00000494052 532 ntBASIC3.29□□□□□ -1.88
CDX1P47902 RPL31P61-201ENST00000496160 376 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.29□□□□□ -1.88
CDX1P47902 CBX3P3-201ENST00000508108 532 ntBASIC3.29□□□□□ -1.88
CDX1P47902 POU5F1P7-201ENST00000508759 541 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.29□□□□□ -1.88
CDX1P47902 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.29□□□□□ -1.88
CDX1P47902 LTV1P1-201ENST00000510683 1237 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC105914.1-201ENST00000511798 226 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.29□□□□□ -1.88
CDX1P47902 MTCO1P35-201ENST00000515270 228 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL158211.1-201ENST00000566763 763 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.29□□□□□ -1.88
CDX1P47902 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.29□□□□□ -1.88
CDX1P47902 VN1R90P-201ENST00000595717 726 ntBASIC3.29□□□□□ -1.88
CDX1P47902 NIFKP6-201ENST00000598115 845 ntBASIC3.29□□□□□ -1.88
CDX1P47902 BDH2P1-201ENST00000602288 736 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AP001429.1-201ENST00000602568 530 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL139344.1-201ENST00000605228 195 ntBASIC3.29□□□□□ -1.88
CDX1P47902 Z99289.3-201ENST00000605586 594 ntBASIC3.29□□□□□ -1.88
CDX1P47902 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AC007546.1-201ENST00000619452 559 ntBASIC3.29□□□□□ -1.88
CDX1P47902 AL445363.3-201ENST00000623080 671 ntBASIC3.29□□□□□ -1.88
CDX1P47902 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.29□□□□□ -1.88
CDX1P47902 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.29□□□□□ -1.88
CDX1P47902 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CDX1P47902 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.28□□□□□ -1.88
CDX1P47902 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 AC007256.1-201ENST00000392253 2765 ntBASIC3.28□□□□□ -1.88
CDX1P47902 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 RNU6-1078P-201ENST00000364522 103 ntBASIC3.28□□□□□ -1.88
CDX1P47902 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 EI24P2-201ENST00000397776 1076 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AL583835.1-201ENST00000399570 407 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 AL161631.1-201ENST00000417933 486 ntBASIC3.28□□□□□ -1.88
CDX1P47902 Z97055.1-201ENST00000419730 712 ntBASIC3.28□□□□□ -1.88
CDX1P47902 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 AL593851.1-201ENST00000426171 157 ntBASIC3.28□□□□□ -1.88
CDX1P47902 RPEP2-201ENST00000432149 701 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.28□□□□□ -1.88
CDX1P47902 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 MTCYBP39-201ENST00000437562 491 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AL831737.1-201ENST00000441288 271 ntBASIC3.28□□□□□ -1.88
CDX1P47902 TXNP1-201ENST00000441872 371 ntBASIC3.28□□□□□ -1.88
CDX1P47902 OR6C5P-201ENST00000452388 923 ntBASIC3.28□□□□□ -1.88
CDX1P47902 NUTF2P7-201ENST00000453086 375 ntBASIC3.28□□□□□ -1.88
CDX1P47902 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 RPL23AP62-201ENST00000463396 453 ntBASIC3.28□□□□□ -1.88
CDX1P47902 RPS23P3-201ENST00000470993 430 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC026784.1-201ENST00000507986 352 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.28□□□□□ -1.88
CDX1P47902 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 RN7SKP13-201ENST00000515933 244 ntBASIC3.28□□□□□ -1.88
CDX1P47902 RN7SKP21-201ENST00000516503 220 ntBASIC3.28□□□□□ -1.88
CDX1P47902 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AP001804.3-201ENST00000525146 880 ntBASIC3.28□□□□□ -1.88
CDX1P47902 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.28□□□□□ -1.88
CDX1P47902 AC023161.2-201ENST00000551218 780 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CDX1P47902 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.28□□□□□ -1.88
CDX1P47902 AC099489.2-201ENST00000574976 260 ntBASIC3.28□□□□□ -1.88
CDX1P47902 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 AL353778.1-201ENST00000603149 408 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC106900.2-201ENST00000604994 317 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC103710.4-201ENST00000609301 899 ntBASIC3.28□□□□□ -1.88
CDX1P47902 VIS1.1-201ENST00000610517 203 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.28□□□□□ -1.88
CDX1P47902 AL450472.3-201ENST00000615578 367 ntBASIC3.28□□□□□ -1.88
CDX1P47902 MIR7702-201ENST00000621931 59 ntBASIC3.28□□□□□ -1.88
CDX1P47902 AC008443.7-201ENST00000622195 246 ntBASIC3.28□□□□□ -1.88
CDX1P47902 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.28□□□□□ -1.88
CDX1P47902 AC112484.5-201ENST00000624189 228 ntBASIC3.28□□□□□ -1.88
CDX1P47902 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 AC068724.3-201ENST00000625906 87 ntBASIC3.28□□□□□ -1.88
CDX1P47902 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms