Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.45□□□□□ -1.86
CUX1P39880 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.45□□□□□ -1.86
CUX1P39880 RN7SKP226-201ENST00000364912 300 ntBASIC3.44□□□□□ -1.86
CUX1P39880 Y_RNA.540-201ENST00000384638 111 ntBASIC3.44□□□□□ -1.86
CUX1P39880 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CUX1P39880 SAR1AP4-201ENST00000429225 591 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.44□□□□□ -1.86
CUX1P39880 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 RN7SKP82-201ENST00000516786 223 ntBASIC3.44□□□□□ -1.86
CUX1P39880 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.44□□□□□ -1.86
CUX1P39880 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.44□□□□□ -1.86
CUX1P39880 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 RPL23AP61-201ENST00000623642 466 ntBASIC3.44□□□□□ -1.86
CUX1P39880 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.44□□□□□ -1.86
CUX1P39880 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 RN7SKP44-201ENST00000363602 316 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AL358453.1-201ENST00000422522 250 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.44□□□□□ -1.86
CUX1P39880 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 AC011611.5-201ENST00000552477 578 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.44□□□□□ -1.86
CUX1P39880 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.44□□□□□ -1.86
CUX1P39880 TPMTP1-201ENST00000592307 737 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AC006254.3-201ENST00000603353 884 ntBASIC3.44□□□□□ -1.86
CUX1P39880 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.43□□□□□ -1.86
CUX1P39880 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.86
CUX1P39880 MIR365B-201ENST00000362317 111 ntBASIC3.43□□□□□ -1.86
CUX1P39880 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CUX1P39880 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
CUX1P39880 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.43□□□□□ -1.86
CUX1P39880 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.43□□□□□ -1.86
CUX1P39880 SNORD13-201ENST00000459299 104 ntBASIC3.43□□□□□ -1.86
CUX1P39880 LRRC37A5P-203ENST00000580181 585 ntBASIC3.43□□□□□ -1.86
CUX1P39880 NF1P5-201ENST00000588287 448 ntBASIC3.43□□□□□ -1.86
CUX1P39880 AC120053.1-201ENST00000607706 736 ntBASIC3.43□□□□□ -1.86
CUX1P39880 Y_RNA.783-201ENST00000613546 102 ntBASIC3.43□□□□□ -1.86
CUX1P39880 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CUX1P39880 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CUX1P39880 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CUX1P39880 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.42□□□□□ -1.86
CUX1P39880 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.42□□□□□ -1.86
CUX1P39880 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CUX1P39880 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CUX1P39880 MIR583-201ENST00000384846 75 ntBASIC3.42□□□□□ -1.86
CUX1P39880 MIR9-3-201ENST00000385084 90 ntBASIC3.42□□□□□ -1.86
CUX1P39880 MIR518E-201ENST00000385252 88 ntBASIC3.42□□□□□ -1.86
CUX1P39880 AC005005.2-201ENST00000420779 380 ntBASIC3.42□□□□□ -1.86
CUX1P39880 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.42□□□□□ -1.86
CUX1P39880 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.42□□□□□ -1.86
CUX1P39880 Y_RNA.116-201ENST00000363292 103 ntBASIC3.41□□□□□ -1.86
CUX1P39880 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CUX1P39880 AL353729.1-201ENST00000425044 720 ntBASIC3.41□□□□□ -1.86
CUX1P39880 AC011753.1-201ENST00000451001 220 ntBASIC3.41□□□□□ -1.86
CUX1P39880 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.41□□□□□ -1.86
CUX1P39880 OR4U1P-201ENST00000554958 912 ntBASIC3.41□□□□□ -1.86
CUX1P39880 AC060766.3-201ENST00000591442 263 ntBASIC3.41□□□□□ -1.86
CUX1P39880 AC002064.3-201ENST00000623448 346 ntBASIC3.41□□□□□ -1.86
CUX1P39880 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.41□□□□□ -1.86
CUX1P39880 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.4□□□□□ -1.86
CUX1P39880 MIR499A-201ENST00000384903 122 ntBASIC3.4□□□□□ -1.86
CUX1P39880 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.4□□□□□ -1.86
CUX1P39880 AL138785.1-201ENST00000425821 331 ntBASIC3.4□□□□□ -1.86
CUX1P39880 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.4□□□□□ -1.86
CUX1P39880 RPS26P30-201ENST00000443431 335 ntBASIC3.4□□□□□ -1.86
CUX1P39880 OR52A4P-203ENST00000498233 1014 ntBASIC3.4□□□□□ -1.86
CUX1P39880 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.4□□□□□ -1.86
CUX1P39880 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.4□□□□□ -1.86
CUX1P39880 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.4□□□□□ -1.86
CUX1P39880 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.4□□□□□ -1.86
CUX1P39880 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.4□□□□□ -1.87
CUX1P39880 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CUX1P39880 AL133412.1-201ENST00000380194 2992 ntBASIC3.4□□□□□ -1.87
CUX1P39880 AC066616.2-201ENST00000559334 1481 ntBASIC3.4□□□□□ -1.87
CUX1P39880 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CUX1P39880 RNU6ATAC38P-201ENST00000408119 126 ntBASIC3.39□□□□□ -1.87
CUX1P39880 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CUX1P39880 USP9YP8-201ENST00000441913 500 ntBASIC3.39□□□□□ -1.87
CUX1P39880 snoU13.18-201ENST00000459483 104 ntBASIC3.39□□□□□ -1.87
CUX1P39880 VTA1P2-201ENST00000520205 911 ntBASIC3.39□□□□□ -1.87
CUX1P39880 NDUFA5P6-201ENST00000542110 379 ntBASIC3.39□□□□□ -1.87
CUX1P39880 VN1R79P-201ENST00000593540 513 ntBASIC3.39□□□□□ -1.87
CUX1P39880 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.39□□□□□ -1.87
CUX1P39880 AC091953.2-201ENST00000623979 160 ntBASIC3.39□□□□□ -1.87
CUX1P39880 AC093909.5-201ENST00000621839 1799 ntBASIC3.39□□□□□ -1.87
CUX1P39880 SAR1AP2-201ENST00000392696 594 ntBASIC3.39□□□□□ -1.87
CUX1P39880 LUZP4P1-201ENST00000415420 344 ntBASIC3.39□□□□□ -1.87
CUX1P39880 AC008173.1-201ENST00000418901 264 ntBASIC3.39□□□□□ -1.87
CUX1P39880 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.39□□□□□ -1.87
CUX1P39880 ARF4P2-201ENST00000430209 526 ntBASIC3.39□□□□□ -1.87
CUX1P39880 NDUFA5P4-201ENST00000436704 385 ntBASIC3.39□□□□□ -1.87
CUX1P39880 FABP5P13-201ENST00000452144 328 ntBASIC3.39□□□□□ -1.87
CUX1P39880 AP000705.1-201ENST00000454567 350 ntBASIC3.39□□□□□ -1.87
CUX1P39880 RPS29P11-201ENST00000496507 171 ntBASIC3.39□□□□□ -1.87
CUX1P39880 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.39□□□□□ -1.87
CUX1P39880 AC092650.2-201ENST00000619984 902 ntBASIC3.39□□□□□ -1.87
CUX1P39880 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CUX1P39880 AC092326.2-201ENST00000624772 1561 ntBASIC3.38□□□□□ -1.87
CUX1P39880 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CUX1P39880 AL606537.1-201ENST00000607258 2011 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms