Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC108467.2-201ENST00000617640 1597 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC000374.1-201ENST00000434698 1745 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC126323.6-202ENST00000568092 3511 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 OR51H2P-202ENST00000641424 3046 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 Y_RNA.38-201ENST00000362617 102 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 Y_RNA.89-201ENST00000363031 102 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 Y_RNA.126-201ENST00000363382 111 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RNU6-1085P-201ENST00000363576 107 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 ARL4AP5-201ENST00000404372 599 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 USP9YP27-201ENST00000418455 438 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RPS15AP12-201ENST00000419498 388 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RPS12P23-201ENST00000419579 400 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 UQCRBP1-201ENST00000421129 336 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC004975.1-201ENST00000428733 208 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RPS15AP9-201ENST00000439856 381 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 MRPL48P1-201ENST00000445390 636 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC109327.1-201ENST00000471666 403 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC021382.1-201ENST00000483523 359 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RPL36AP41-201ENST00000493820 306 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 COX7A2P2-201ENST00000505291 250 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC098799.2-201ENST00000509466 868 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 RNU6-507P-201ENST00000516045 100 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 Y_RNA.693-201ENST00000516641 110 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 AP001781.1-201ENST00000530977 207 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 PTP4A1P6-201ENST00000531034 478 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 SUB1P2-201ENST00000556401 297 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXD3P31249 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC074050.1-201ENST00000563247 211 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC025678.1-201ENST00000567861 338 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 MIR3936-201ENST00000584304 110 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC073091.2-201ENST00000603205 907 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC011451.2-201ENST00000604303 598 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AC008277.2-201ENST00000605196 797 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC017083.3-201ENST00000609955 700 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AL590099.1-201ENST00000615276 138 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 DUXAP9-208ENST00000622815 614 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 AL356585.4-201ENST00000623078 1229 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 MIR1321-201ENST00000637766 79 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 ZNF137P-201ENST00000456718 1920 ntBASIC3.59□□□□□ -1.83
HOXD3P31249 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HOXD3P31249 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD3P31249 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD3P31249 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
HOXD3P31249 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.59□□□□□ -1.84
HOXD3P31249 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXD3P31249 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD3P31249 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD3P31249 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 AC139713.2-215ENST00000641428 5037 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD3P31249 RNU6-989P-201ENST00000362756 107 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 Y_RNA.70-201ENST00000362886 110 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 SNORA72.1-201ENST00000363485 129 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 RNU6-534P-201ENST00000364877 106 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 RNU6-169P-201ENST00000365336 107 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 SNORA20.2-201ENST00000383922 131 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms