Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC024595.1-201ENST00000623088 387 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AL109659.3-201ENST00000624985 950 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC092608.3-201ENST00000625017 386 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AL137790.1-201ENST00000634283 177 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 ENSAP3-201ENST00000312710 333 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 SNORD56.5-201ENST00000364281 72 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 RNU6-1151P-201ENST00000384684 107 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 MIR512-1-201ENST00000384913 84 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AL122016.1-201ENST00000403365 367 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 RPL21P32-201ENST00000419877 477 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AL513321.1-201ENST00000441175 761 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AP001486.1-201ENST00000463339 476 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC080014.1-201ENST00000496877 1201 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 DYNLL1P6-201ENST00000503440 264 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC098799.1-201ENST00000504752 800 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HLA-DMBP28068 RNU6-202P-201ENST00000515998 96 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 RNU1-103P-201ENST00000516502 125 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 OR4A45P-201ENST00000529954 901 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 DUXAP4-201ENST00000603046 613 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC008962.1-201ENST00000605729 304 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 AL360181.4-201ENST00000621752 134 ntBASIC2.17□□□□□ -2.06
HLA-DMBP28068 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.17□□□□□ -2.06
HLA-DMBP28068 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HLA-DMBP28068 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HLA-DMBP28068 RNU6-989P-201ENST00000362756 107 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 Y_RNA.111-201ENST00000363248 100 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 SNORA44-201ENST00000384584 132 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 TAF9BP2-201ENST00000400856 499 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL590004.2-201ENST00000404787 371 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 RNU6-272P-201ENST00000411028 104 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 HMGN2P35-201ENST00000412164 270 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 HMGB3P31-201ENST00000413333 595 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 RAB11AP1-201ENST00000442978 646 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL592437.1-201ENST00000443781 492 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 UBBP3-201ENST00000445497 241 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 MTND1P33-201ENST00000446251 917 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC104472.2-201ENST00000469035 601 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL049873.1-201ENST00000480540 376 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC111000.2-201ENST00000507775 550 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 SCGB1D5P-201ENST00000515134 247 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 TRAV11-201ENST00000539512 339 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 EIF4BP1-201ENST00000554881 351 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC012414.2-201ENST00000559474 187 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC090695.1-201ENST00000561269 1222 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AADACP1-206ENST00000561502 1193 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC138761.3-201ENST00000579993 334 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 COX6CP3-201ENST00000580869 223 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC009220.3-201ENST00000604318 586 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 DPRXP5-201ENST00000604662 539 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC005046.1-201ENST00000608515 625 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AC006111.3-201ENST00000622137 383 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 AP000676.4-201ENST00000624659 623 ntBASIC2.16□□□□□ -2.06
HLA-DMBP28068 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HLA-DMBP28068 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.16□□□□□ -2.06
HLA-DMBP28068 AL035425.3-201ENST00000564206 4996 ntBASIC2.15□□□□□ -2.06
HLA-DMBP28068 AC092593.1-201ENST00000515413 1815 ntBASIC2.15□□□□□ -2.06
HLA-DMBP28068 SNORA9.2-201ENST00000365361 133 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 239.9 ms