Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.7□□□□□ -1.98
COL5A3P25940 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.7□□□□□ -1.98
COL5A3P25940 AL359893.1-201ENST00000447628 1580 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.69□□□□□ -1.98
COL5A3P25940 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.69□□□□□ -1.98
COL5A3P25940 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.69□□□□□ -1.98
COL5A3P25940 Y_RNA.140-201ENST00000363474 103 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 Y_RNA.796-201ENST00000364268 102 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 Y_RNA.799-201ENST00000364992 102 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-1320P-201ENST00000390838 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-1269P-201ENST00000391139 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL5A3P25940 MIR1287-201ENST00000408492 90 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC2.69□□□□□ -1.98
COL5A3P25940 SDCBPP3-201ENST00000419629 891 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.69□□□□□ -1.98
COL5A3P25940 TRBV26-201ENST00000456572 344 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-599P-201ENST00000459383 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-1193P-201ENST00000459461 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 SNORD39.2-201ENST00000579995 76 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 AL353997.5-201ENST00000618886 171 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-368P-201ENST00000620928 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 RNU6-538P-201ENST00000622329 107 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.69□□□□□ -1.98
COL5A3P25940 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL5A3P25940 AC107021.2-201ENST00000567714 2095 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 AP001148.1-201ENST00000624124 2359 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 AC011460.1-201ENST00000636268 1834 ntBASIC2.69□□□□□ -1.98
COL5A3P25940 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 RNU1-138P-201ENST00000384093 164 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 RN7SKP123-201ENST00000410732 291 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 AL035551.1-201ENST00000446931 348 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AL118520.1-201ENST00000450770 291 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC072039.1-201ENST00000477611 581 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC098583.1-201ENST00000480875 255 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.68□□□□□ -1.98
COL5A3P25940 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.68□□□□□ -1.98
COL5A3P25940 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A3P25940 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.68□□□□□ -1.98
COL5A3P25940 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 AC234775.3-201ENST00000564612 656 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC107294.3-201ENST00000609211 526 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AL110115.1-201ENST00000614396 364 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 C2orf27A-204ENST00000623058 969 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC244517.12-201ENST00000623581 663 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 CYP3A51P-201ENST00000633513 256 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
COL5A3P25940 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 RNU1-17P-201ENST00000363022 152 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A3P25940 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.68□□□□□ -1.98
COL5A3P25940 RNU6-1263P-201ENST00000384601 106 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 SPA17P1-201ENST00000416656 452 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.68□□□□□ -1.98
COL5A3P25940 HMGB1P48-201ENST00000446155 598 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 AC026412.2-201ENST00000512270 1075 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 IGHV3-76-201ENST00000522465 295 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A3P25940 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A3P25940 MIR6132-201ENST00000622083 109 ntBASIC2.68□□□□□ -1.98
COL5A3P25940 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A3P25940 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.67□□□□□ -1.98
COL5A3P25940 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 RNU6-146P-201ENST00000384602 108 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 MIR7-2-201ENST00000384970 110 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 NPM1P10-201ENST00000398310 865 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.67□□□□□ -1.98
COL5A3P25940 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A3P25940 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.67□□□□□ -1.98
COL5A3P25940 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A3P25940 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.67□□□□□ -1.98
COL5A3P25940 AC067838.1-201ENST00000606064 577 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 XIST_intron.1-201ENST00000619444 68 ntBASIC2.67□□□□□ -1.98
COL5A3P25940 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
COL5A3P25940 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.67□□□□□ -1.98
COL5A3P25940 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A3P25940 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
COL5A3P25940 Y_RNA.269-201ENST00000364685 89 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 Y_RNA.508-201ENST00000384502 114 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 VN1R31P-201ENST00000417498 730 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 AL445646.1-201ENST00000431784 216 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 SNORD13-201ENST00000459299 104 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 CCNHP1-201ENST00000513311 678 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A3P25940 GNAI2P1-201ENST00000541815 315 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms