Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FAT1P1-201ENST00000406588 507 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.22□□□□□ -2.05
COL6A3P12111 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
COL6A3P12111 MTND3P6-201ENST00000485242 339 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 AP002748.2-201ENST00000528671 348 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.22□□□□□ -2.05
COL6A3P12111 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.22□□□□□ -2.05
COL6A3P12111 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL6A3P12111 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
COL6A3P12111 AL451074.5-201ENST00000415894 435 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.21□□□□□ -2.06
COL6A3P12111 HIGD1AP10-201ENST00000527837 282 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.21□□□□□ -2.06
COL6A3P12111 AL451049.1-201ENST00000608672 497 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 AL512598.1-201ENST00000610158 273 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL6A3P12111 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL6A3P12111 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL6A3P12111 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.21□□□□□ -2.06
COL6A3P12111 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.21□□□□□ -2.06
COL6A3P12111 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.21□□□□□ -2.06
COL6A3P12111 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.21□□□□□ -2.06
COL6A3P12111 MIR6734-201ENST00000621166 68 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 DCAF13P1-201ENST00000495256 1330 ntBASIC2.21□□□□□ -2.06
COL6A3P12111 Y_RNA.68-201ENST00000362881 102 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 RNU1-87P-201ENST00000363727 170 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 MIR598-201ENST00000384868 97 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 MIR9-3-201ENST00000385084 90 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC105402.2-201ENST00000438503 358 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC2.2□□□□□ -2.06
COL6A3P12111 AC022634.1-201ENST00000520765 532 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.2□□□□□ -2.06
COL6A3P12111 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
COL6A3P12111 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL6A3P12111 AC009487.4-201ENST00000624969 3585 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 MTCO1P4-201ENST00000520516 1409 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL6A3P12111 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL6A3P12111 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.2□□□□□ -2.06
COL6A3P12111 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.2□□□□□ -2.06
COL6A3P12111 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.2□□□□□ -2.06
COL6A3P12111 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.2□□□□□ -2.06
COL6A3P12111 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.2□□□□□ -2.06
COL6A3P12111 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.2□□□□□ -2.06
COL6A3P12111 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL6A3P12111 HMGB1P27-201ENST00000431429 603 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC003989.2-201ENST00000440224 169 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AL118520.1-201ENST00000450770 291 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 LINC00888-204ENST00000487386 421 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.2□□□□□ -2.06
COL6A3P12111 MIR4255-201ENST00000579351 72 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC011492.1-201ENST00000600023 315 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC019159.1-201ENST00000605094 187 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 AC009831.4-201ENST00000620744 325 ntBASIC2.2□□□□□ -2.06
COL6A3P12111 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.2□□□□□ -2.06
COL6A3P12111 AC008432.1-201ENST00000615912 1320 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AC245100.2-201ENST00000454544 1679 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.19□□□□□ -2.06
COL6A3P12111 AL391987.6-201ENST00000305671 199 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AL162578.1-201ENST00000406202 378 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AC234782.4-201ENST00000417646 1048 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.19□□□□□ -2.06
COL6A3P12111 POU5F1P7-201ENST00000508759 541 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.19□□□□□ -2.06
COL6A3P12111 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.19□□□□□ -2.06
COL6A3P12111 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
COL6A3P12111 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
COL6A3P12111 TRIM60P13-201ENST00000432350 1283 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AC007182.2-201ENST00000489251 402 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.19□□□□□ -2.06
COL6A3P12111 AP005660.1-201ENST00000522972 293 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 AP000857.1-201ENST00000532151 543 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC2.19□□□□□ -2.06
COL6A3P12111 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
COL6A3P12111 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL6A3P12111 AC026523.2-201ENST00000625039 7739 ntBASIC2.19□□□□□ -2.06
COL6A3P12111 Y_RNA.251-201ENST00000364551 99 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 RPL31P1-201ENST00000398116 372 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 UBE2V1P6-201ENST00000430840 422 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 RPL23AP74-201ENST00000437246 471 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 HSPE1P28-201ENST00000443139 211 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.18□□□□□ -2.06
COL6A3P12111 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.18□□□□□ -2.06
COL6A3P12111 HMGN2P28-201ENST00000606102 262 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A3P12111 AL353597.2-202ENST00000434901 373 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 HMGN1P7-201ENST00000491722 313 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.18□□□□□ -2.06
COL6A3P12111 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.18□□□□□ -2.06
COL6A3P12111 AP001804.3-201ENST00000525146 880 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 OR4P1P-201ENST00000530808 1136 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 AC083760.1-201ENST00000589621 670 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.18□□□□□ -2.06
COL6A3P12111 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
COL6A3P12111 AL606537.1-201ENST00000607258 2011 ntBASIC2.18□□□□□ -2.06
COL6A3P12111 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms