Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RPS20P1-201ENST00000434853 354 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 LSM1P1-201ENST00000438629 273 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LMX1BO60663 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 MEMO1P3-201ENST00000459811 302 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC108941.1-201ENST00000502853 530 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC114981.1-201ENST00000503897 678 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC093809.1-201ENST00000509155 340 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 RNA5SP216-201ENST00000516111 123 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC104986.1-201ENST00000517978 436 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 SOD1P3-201ENST00000518682 454 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 AP002453.2-201ENST00000533503 320 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 OR6C73P-201ENST00000546432 358 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC124947.2-202ENST00000552735 133 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 MIR4444-1-201ENST00000581696 74 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC012417.1-201ENST00000582307 1039 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 MIR544B-201ENST00000582372 78 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 MIR4444-2-201ENST00000584390 74 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.55□□□□□ -1.84
LMX1BO60663 AL161729.3-201ENST00000603533 673 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AL355816.1-201ENST00000607951 118 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AC131902.3-201ENST00000611767 581 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC093591.3-201ENST00000634516 308 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 OR5AK4P-201ENST00000635912 903 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 AC010329.2-201ENST00000595195 2737 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.55□□□□□ -1.84
LMX1BO60663 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LMX1BO60663 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.55□□□□□ -1.84
LMX1BO60663 AL445437.1-201ENST00000623157 3087 ntBASIC3.55□□□□□ -1.84
LMX1BO60663 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.54□□□□□ -1.84
LMX1BO60663 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
LMX1BO60663 PHKBP1-201ENST00000450951 1951 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 AC004520.1-201ENST00000608362 1413 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.54□□□□□ -1.84
LMX1BO60663 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 SNORD35B-201ENST00000363660 87 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 RNU5F-7P-201ENST00000363696 115 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 U8.14-201ENST00000390843 143 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 ENSAP1-201ENST00000392855 326 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 HMGB1P17-201ENST00000403495 628 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 HMGB3P23-201ENST00000414981 585 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 RPL30P16-201ENST00000419341 429 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 USP9YP18-201ENST00000425912 695 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 MTND1P2-201ENST00000430604 821 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC109583.1-201ENST00000432156 268 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 MTND3P21-201ENST00000433774 331 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 RPL23AP46-201ENST00000438548 490 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.54□□□□□ -1.84
LMX1BO60663 AL033528.1-201ENST00000453780 140 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC027673.1-201ENST00000456245 405 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 BTF3P5-201ENST00000457252 467 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 RNU7-136P-201ENST00000458819 69 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC092757.1-201ENST00000467293 467 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AL121769.1-201ENST00000469473 401 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 VN1R105P-201ENST00000486595 910 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LMX1BO60663 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.54□□□□□ -1.84
LMX1BO60663 AC021678.1-201ENST00000505195 936 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AF131216.2-201ENST00000512316 564 ntBASIC3.54□□□□□ -1.84
LMX1BO60663 AC099522.1-202ENST00000514718 367 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms