Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC85CA6NKD9 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RNA5SP124-201ENST00000362739 110 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RNU6-169P-201ENST00000365336 107 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RNU1-39P-201ENST00000383897 165 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RNA5SP345-201ENST00000410646 108 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RAC1P7-201ENST00000445367 377 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 H2AFZP5-201ENST00000446960 382 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RPL23AP20-201ENST00000447965 421 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC108059.3-201ENST00000456388 214 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC090686.1-201ENST00000481577 749 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 Y_RNA.693-201ENST00000516641 110 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 OR4T1P-201ENST00000554933 911 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC068135.2-201ENST00000569293 1028 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC004908.2-201ENST00000609090 574 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 U73479.1-201ENST00000618062 168 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 AC244258.1-201ENST00000637553 1071 ntBASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC85CA6NKD9 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC85CA6NKD9 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.21□□□□□ -1.57
CCDC85CA6NKD9 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.21□□□□□ -1.57
CCDC85CA6NKD9 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC85CA6NKD9 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC85CA6NKD9 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC092681.1-201ENST00000297369 291 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 Y_RNA.481-201ENST00000384373 102 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 MIR659-201ENST00000384963 97 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 Z98745.1-201ENST00000402553 494 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 RAB9AP3-201ENST00000412737 573 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC073410.1-201ENST00000435125 589 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AL353572.1-201ENST00000442490 417 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LINC02210-201ENST00000444561 288 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 TPT1P14-201ENST00000448018 505 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 RAB9AP1-201ENST00000449393 573 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC007967.1-201ENST00000455422 1159 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC090572.1-201ENST00000519251 160 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC109635.3-201ENST00000529536 185 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 CR383656.7-201ENST00000548164 174 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AP001429.1-201ENST00000602568 530 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC008966.2-201ENST00000606157 453 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC245517.5-201ENST00000611529 162 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC005609.4-201ENST00000625071 447 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 LRRC77P-213ENST00000637727 880 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 MIR1321-201ENST00000637766 79 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC85CA6NKD9 AC244517.1-201ENST00000606030 2086 ntBASIC5.2□□□□□ -1.58
CCDC85CA6NKD9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC85CA6NKD9 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms