Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 EEF1E1P1-201ENST00000446998 430 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 MTCO3P20-201ENST00000454926 688 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 MTND2P14-201ENST00000482139 351 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 EEF1A1P37-201ENST00000522748 715 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 MIR1254-2-201ENST00000579553 63 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL353997.4-201ENST00000586196 166 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 AL031281.1-201ENST00000604049 488 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 VIS1.1-201ENST00000610517 203 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS28Q9UK41 AC095031.1-201ENST00000623685 672 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
VPS28Q9UK41 RPS4XP5-202ENST00000449995 1334 ntBASIC3.92□□□□□ -1.78
VPS28Q9UK41 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS28Q9UK41 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 SNORD113-6-201ENST00000363345 75 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS28Q9UK41 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS28Q9UK41 MTCO1P39-201ENST00000426148 480 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AL591419.1-201ENST00000427423 339 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 SNORA71B-202ENST00000439232 272 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AL591719.1-201ENST00000444669 744 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 PAXBP1P1-201ENST00000449315 447 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 RPL23AP35-201ENST00000451906 501 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 UBE2CP3-201ENST00000502715 450 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC105914.1-201ENST00000511798 226 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 SNORA31.8-201ENST00000516327 108 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 SCARNA14-201ENST00000516903 136 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 MRPS36P3-201ENST00000519284 130 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 BNIP3P38-201ENST00000601117 544 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AL022099.1-201ENST00000604551 712 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC092354.2-201ENST00000607786 514 ntBASIC3.91□□□□□ -1.78
VPS28Q9UK41 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS28Q9UK41 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
VPS28Q9UK41 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.9□□□□□ -1.78
VPS28Q9UK41 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
VPS28Q9UK41 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
VPS28Q9UK41 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS28Q9UK41 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS28Q9UK41 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 RNU6-462P-201ENST00000362659 105 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 SNORA62.3-201ENST00000365110 153 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 MIR135A2-201ENST00000384854 100 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 RNU6-882P-201ENST00000391025 103 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AP000567.1-201ENST00000406413 156 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 SNORA11-201ENST00000408789 128 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 RN7SKP27-201ENST00000410684 333 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 OR6K5P-201ENST00000447050 945 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 MTND1P31-201ENST00000449206 961 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC017037.2-201ENST00000513850 890 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC092851.1-201ENST00000535964 478 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 AC093424.1-201ENST00000604999 338 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms