Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 BRWD1P3-201ENST00000428816 390 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 USP9YP8-201ENST00000441913 500 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 TPT1P13-201ENST00000449760 499 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL353691.1-201ENST00000451332 387 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 ST13P14-201ENST00000474095 734 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL139099.1-201ENST00000497398 403 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 GAPDHP56-201ENST00000506031 988 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC090281.1-201ENST00000523019 276 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC022616.3-201ENST00000523940 148 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 BRD9P1-201ENST00000529855 560 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 OR5AN2P-201ENST00000534535 896 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL356489.2-201ENST00000566968 3528 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 MIR5699-201ENST00000578903 90 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 C8orf59P2-201ENST00000603441 271 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 BNIP3P10-201ENST00000605360 577 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 SNORD91B-202ENST00000608459 222 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC004908.2-201ENST00000609090 574 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC002550.2-201ENST00000621246 394 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AP002799.1-201ENST00000623552 423 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AP001784.1-201ENST00000624107 428 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AC022893.2-201ENST00000564832 3296 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL354685.2-201ENST00000448218 1447 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.72-201ENST00000362894 103 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNU5A-8P-201ENST00000364102 114 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNU6-761P-201ENST00000384148 107 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 U3.30-201ENST00000391308 210 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL590762.2-201ENST00000395798 571 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL080315.1-201ENST00000406055 466 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 OR51A5P-201ENST00000415429 942 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 CHEK2P3-201ENST00000416118 248 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC093162.1-201ENST00000419682 124 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL353193.1-201ENST00000421444 268 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RBMY2QP-201ENST00000429799 1147 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 PSMD10P3-201ENST00000437000 448 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC018710.1-201ENST00000506509 158 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNU6-875P-201ENST00000516488 106 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RN7SKP277-201ENST00000516895 283 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RNA5SP337-201ENST00000517007 109 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC090572.1-201ENST00000519251 160 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC055876.1-202ENST00000567053 138 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 COX6CP3-201ENST00000580869 223 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC105224.1-201ENST00000587055 421 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC022726.1-201ENST00000587475 207 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 DISC2.1-201ENST00000612827 205 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC130324.3-201ENST00000614165 542 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AC138649.5-201ENST00000637456 137 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 AL138713.1-201ENST00000624026 2130 ntBASIC4.24□□□□□ -1.73
VSX1Q9NZR4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VSX1Q9NZR4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VSX1Q9NZR4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms