Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC3Q9BQI4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC018555.1-201ENST00000567548 1980 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC007823.1-201ENST00000569932 1566 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC066616.2-201ENST00000559334 1481 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ZNF542P-204ENST00000482727 1305 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 SNORD9-201ENST00000362566 104 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 RNA5SP50-201ENST00000363731 107 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 SNRPEP2-201ENST00000397592 279 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AL035407.1-201ENST00000429211 571 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ANP32BP2-201ENST00000454525 545 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC078817.1-201ENST00000492623 435 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 OR4G11P-201ENST00000492842 939 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 MTCYBP17-201ENST00000503579 789 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC147055.4-201ENST00000504399 745 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 MTCO3P44-201ENST00000510977 541 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC026412.2-201ENST00000512270 1075 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 RNA5SP216-201ENST00000516111 123 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 RNY4P37-201ENST00000516225 96 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 RN7SKP116-201ENST00000516902 319 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 IGKV2D-36-201ENST00000518643 226 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 OR4R3P-201ENST00000525084 838 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AP000926.4-201ENST00000527351 454 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AP003385.6-201ENST00000531603 374 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 UBE2NP1-201ENST00000545592 458 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC107016.1-201ENST00000550463 337 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CYCSP2-201ENST00000558168 301 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC090888.2-201ENST00000559765 1144 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 LARP7P2-201ENST00000575306 125 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ISCA1P3-201ENST00000577104 373 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CLIC4P2-201ENST00000601934 717 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 BRDTP1-201ENST00000605735 677 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AL360219.1-201ENST00000610230 366 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AL136981.2-201ENST00000617319 734 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AC019226.2-201ENST00000625973 424 ntBASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC3Q9BQI4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RNU6-878P-201ENST00000384578 110 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 MIR490-201ENST00000384865 128 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RPL31P1-201ENST00000398116 372 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RNA5SP39-201ENST00000411245 120 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 PIGPP2-201ENST00000411569 458 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC098592.1-201ENST00000419352 333 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 CYCSP4-201ENST00000429682 331 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 MTCYBP34-201ENST00000439552 670 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC010655.1-201ENST00000449336 292 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC099563.1-201ENST00000456086 418 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 HMGN2P7-201ENST00000456186 273 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 SUMO2P2-201ENST00000456482 255 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 HMGB3P30-201ENST00000457863 606 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 snoU109.4-201ENST00000458953 143 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 XKRY-201ENST00000510392 1100 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 RANP9-201ENST00000519957 271 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AC007458.1-201ENST00000542812 373 ntBASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC3Q9BQI4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms