Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 BRAFP1-201ENST00000445336 2703 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AP005435.3-201ENST00000531260 3198 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 RNU4-90P-201ENST00000362773 141 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 SNORA70.3-201ENST00000365075 132 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AL133388.1-201ENST00000404509 287 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 RNU6-735P-201ENST00000410612 107 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC016712.1-201ENST00000431088 378 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 RPL12P49-201ENST00000441100 121 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 PFN1P11-201ENST00000445829 389 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC092865.4-201ENST00000477936 615 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC012158.1-204ENST00000483430 465 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC022133.1-201ENST00000490961 571 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 RN7SKP67-201ENST00000515905 235 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 SNORD116-28-201ENST00000516123 91 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 MIR892C-201ENST00000516410 77 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 MIR2355-201ENST00000517199 87 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC140063.1-201ENST00000541343 259 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC023824.2-201ENST00000566185 400 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC120057.2-201ENST00000571520 271 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 MIR4732-201ENST00000581873 76 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 U1.25-201ENST00000614085 162 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC034102.8-201ENST00000615146 484 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC087516.1-201ENST00000561236 2428 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 AC005725.1-201ENST00000577346 2607 ntBASIC5.87□□□□□ -1.47
USB1Q9BQ65 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.87□□□□□ -1.47
USB1Q9BQ65 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
USB1Q9BQ65 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 CLCA3P-203ENST00000490028 2781 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AP000756.2-201ENST00000624168 2567 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 RNA5SP308-201ENST00000362532 115 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 Y_RNA.383-201ENST00000383855 97 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 SNORA12.2-201ENST00000391040 156 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 RNU6-394P-201ENST00000410735 107 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 RNU6-603P-201ENST00000411403 107 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AL359092.1-201ENST00000417156 265 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC128677.1-201ENST00000436016 442 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 COL11A2P1-205ENST00000441798 676 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC099670.1-201ENST00000455141 783 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 RPL23AP81-201ENST00000455252 467 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC073581.1-201ENST00000519036 575 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 CASP1P1-201ENST00000526345 212 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC007956.1-201ENST00000555623 542 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 RN7SL230P-201ENST00000580835 303 ntBASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
USB1Q9BQ65 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
USB1Q9BQ65 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms