Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 EPS15P1-201ENST00000448836 336 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-1Q99801 KATNBL1P6-201ENST00000453433 915 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RPS20P24-201ENST00000457473 361 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AP001992.1-205ENST00000462248 379 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RN7SL93P-201ENST00000463035 293 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 PPIAP15-201ENST00000479662 484 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RPS4XP15-201ENST00000489210 795 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC023424.2-201ENST00000493479 777 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC092045.1-201ENST00000495716 1231 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 RNA5SP309-201ENST00000516670 106 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC009101.1-201ENST00000568135 242 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC004987.4-201ENST00000603383 338 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RNU6-88P-201ENST00000606801 100 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC106028.5-201ENST00000610332 395 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL391261.4-201ENST00000616012 481 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL139089.1-201ENST00000620372 975 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-1Q99801 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-1Q99801 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-1Q99801 RPS4XP5-202ENST00000449995 1334 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
NKX3-1Q99801 LINC00561-201ENST00000565815 2738 ntBASIC3.34□□□□□ -1.88
NKX3-1Q99801 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
NKX3-1Q99801 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL021368.2-201ENST00000606125 5352 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 MIR372-201ENST00000362225 67 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 RNA5SP515-201ENST00000364570 118 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 RNU1-64P-201ENST00000365443 163 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 RNA5SP283-201ENST00000365604 119 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 RPL7P8-201ENST00000411964 730 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 RPS15AP38-201ENST00000413110 372 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC092447.6-201ENST00000414578 210 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL445669.1-201ENST00000426743 755 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL390023.1-201ENST00000428836 262 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 Z74696.2-201ENST00000436514 498 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 MUPP-201ENST00000438111 566 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 HMGB3P30-201ENST00000457863 606 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 HMGB1P25-201ENST00000468402 607 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC078817.1-201ENST00000492623 435 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC068305.1-201ENST00000497406 726 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 RAC1P2-201ENST00000511164 579 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 FTH1P9-201ENST00000513251 355 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 RN7SKP116-201ENST00000516902 319 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 COX6CP8-201ENST00000522620 226 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 OR8R1P-201ENST00000543943 764 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 BBIP1P1-201ENST00000602999 279 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC080013.4-201ENST00000607624 649 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL445264.1-201ENST00000621719 171 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL161637.1-201ENST00000622380 412 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 MIR492-201ENST00000638676 116 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 AL445523.1-201ENST00000451184 1362 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
NKX3-1Q99801 ZNF833P-201ENST00000424938 1494 ntBASIC3.33□□□□□ -1.88
NKX3-1Q99801 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms