Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 MTCO2P32-201ENST00000514865 403 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 LARP7P2-201ENST00000575306 125 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC015917.1-201ENST00000579654 510 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 MIR3944-201ENST00000581277 108 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 BNIP3P33-201ENST00000598912 569 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC073657.2-201ENST00000605661 303 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AP001521.1-201ENST00000609150 300 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS35Q96QK1 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS35Q96QK1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AL645568.2-201ENST00000432815 1337 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS35Q96QK1 MIR30E-201ENST00000362104 92 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS35Q96QK1 RNU6-298P-201ENST00000390888 96 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AL451062.2-201ENST00000427515 271 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 VN1R10P-201ENST00000447106 875 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC112492.1-201ENST00000449607 712 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AL445669.2-201ENST00000454425 421 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC091153.1-201ENST00000466297 402 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC092757.1-201ENST00000467293 467 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 RN7SL601P-201ENST00000471221 293 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 RPL32P34-201ENST00000486380 400 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 MTND2P7-201ENST00000521337 640 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC138915.2-201ENST00000569776 97 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC024220.1-201ENST00000603675 484 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 AC055876.5-201ENST00000605667 259 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.29□□□□□ -1.88
VPS35Q96QK1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS35Q96QK1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS35Q96QK1 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 RNU6-50P-201ENST00000362356 103 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AP002088.1-201ENST00000382740 395 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 RNU6-1000P-201ENST00000391066 106 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 TAF9BP1-201ENST00000396646 746 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 RNA5SP44-201ENST00000410446 133 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 HMGN1P24-201ENST00000412282 298 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC092447.6-201ENST00000414578 210 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AL158156.1-201ENST00000422509 473 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 DPPA2P1-201ENST00000428060 556 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC005326.1-201ENST00000429197 123 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AL353705.1-201ENST00000433468 480 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 FTH1P1-201ENST00000437933 532 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC091179.1-201ENST00000461606 579 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC108860.1-201ENST00000484521 383 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AL358832.1-201ENST00000497800 389 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC096751.1-202ENST00000502691 1067 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC110794.1-201ENST00000505816 425 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC074250.1-201ENST00000511117 192 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 RNA5SP468-201ENST00000516782 93 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 MIR2276-201ENST00000516886 89 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS35Q96QK1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS35Q96QK1 CKS1BP3-201ENST00000600888 237 ntBASIC3.28□□□□□ -1.88
VPS35Q96QK1 AC012669.1-201ENST00000603209 283 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms