Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNVU1-14-201ENST00000384770 164 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 Y_RNA.578-201ENST00000390903 88 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 MTCO1P56-201ENST00000401674 224 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL158156.1-201ENST00000422509 473 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 GLRXP1-201ENST00000423261 334 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AP000907.1-201ENST00000428428 510 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 RPS4XP10-201ENST00000465034 731 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AC110794.1-201ENST00000505816 425 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AC105914.1-201ENST00000511798 226 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 RNU6-1095P-201ENST00000516148 108 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 UBE2NP1-201ENST00000545592 458 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 FAM60BP-201ENST00000578364 658 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AP001029.3-201ENST00000588063 596 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 BDH2P1-201ENST00000602288 736 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AC010738.1-201ENST00000604970 987 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL157817.1-201ENST00000614264 790 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AC010975.3-201ENST00000618727 978 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 AL356321.1-201ENST00000621360 228 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 U6.101-201ENST00000637707 76 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC43Q96MW1 SGO1P2-201ENST00000429458 1589 ntBASIC3.72□□□□□ -1.81
CCDC43Q96MW1 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.81
CCDC43Q96MW1 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC43Q96MW1 AC021755.1-201ENST00000559747 1447 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 CR383658.2-201ENST00000547576 1525 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 SNORD51-201ENST00000384320 80 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 CYCSP45-201ENST00000402289 315 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 UBE2D3P2-201ENST00000424409 445 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC007967.1-201ENST00000455422 1159 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 RPL23AP31-201ENST00000456160 467 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AL136097.1-201ENST00000456945 913 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 RPS23P3-201ENST00000470993 430 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AL358832.1-201ENST00000497800 389 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 FABP5P12-201ENST00000515543 389 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 MIR2276-201ENST00000516886 89 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 BNIP3P22-201ENST00000593399 556 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 AC093673.2-201ENST00000609674 331 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 RNU6-1192P-201ENST00000612197 107 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 RNU6-489P-201ENST00000618289 107 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 SNORD39.4-201ENST00000620099 78 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 MKKS-204ENST00000639674 192 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC43Q96MW1 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.71□□□□□ -1.82
CCDC43Q96MW1 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 RNU6-878P-201ENST00000384578 110 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 RNU6-298P-201ENST00000390888 96 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 SNRPEP2-201ENST00000397592 279 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 RNA5SP31-201ENST00000411144 127 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC109780.2-201ENST00000413467 845 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 MTND4P3-201ENST00000417829 541 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC006028.1-201ENST00000438379 402 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 RPL17P49-201ENST00000443728 411 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 RPL12P26-201ENST00000452430 487 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC021146.5-201ENST00000503544 545 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 HSPD1P15-201ENST00000505573 1122 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 HIGD1AP1-201ENST00000550979 275 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 GTF2IP8-201ENST00000560687 584 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms