Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL391646.1-201ENST00000603860 190 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AL035413.2-201ENST00000604801 525 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 BCRP9-201ENST00000605312 388 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC011816.2-201ENST00000607089 556 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AL442067.2-201ENST00000614033 363 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC090574.1-201ENST00000623186 233 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC010300.1-201ENST00000600671 5134 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 SNORA62.3-201ENST00000365110 153 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 SNORD66.1-201ENST00000391230 76 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 ENSAP1-201ENST00000392855 326 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR921-201ENST00000401133 56 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR1302-11-201ENST00000408051 138 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR1302-9-201ENST00000408365 138 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR1302-10-201ENST00000408734 138 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AF228730.4-201ENST00000421457 183 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AL589872.1-201ENST00000426602 288 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC023347.2-201ENST00000433994 462 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 RN7SL604P-201ENST00000492589 296 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AP002812.1-201ENST00000495378 474 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 HMGN1P13-201ENST00000505795 138 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 FGF7P4-201ENST00000509595 295 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 RNU6-1003P-201ENST00000517099 105 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 HSPA8P13-201ENST00000523715 472 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AP000859.1-201ENST00000525536 307 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 HIF1AP1-201ENST00000553642 175 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP97-201ENST00000568955 471 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR4444-1-201ENST00000581696 74 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR4444-2-201ENST00000584390 74 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR1302-2-201ENST00000607096 138 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AL161734.1-201ENST00000609720 557 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC099669.2-201ENST00000616549 437 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 uc_338.9-201ENST00000617424 182 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 MIR7151-201ENST00000617477 60 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AC039056.2-201ENST00000622261 511 ntBASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.59□□□□□ -1.51
USHBP1Q8N6Y0 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
USHBP1Q8N6Y0 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
USHBP1Q8N6Y0 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
USHBP1Q8N6Y0 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.72-201ENST00000362894 103 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.86-201ENST00000363020 111 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.162-201ENST00000363683 102 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-777P-201ENST00000364265 104 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC108032.1-201ENST00000416706 207 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 RPL36AP10-201ENST00000421785 322 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AL035410.1-201ENST00000427409 427 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AL451062.2-201ENST00000427515 271 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AL031663.1-201ENST00000437445 219 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 SDCBPP1-201ENST00000440192 890 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC108751.2-201ENST00000469993 231 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC022034.3-201ENST00000471393 478 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 RPS29P19-201ENST00000479709 171 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms