Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PRR13P7-201ENST00000605538 430 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 AP001784.1-201ENST00000624107 428 ntBASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
UBE3DQ7Z6J8 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
UBE3DQ7Z6J8 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 PHKBP1-201ENST00000450951 1951 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.188-201ENST00000363952 111 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.399-201ENST00000383955 105 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP339-201ENST00000390987 122 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC009804.1-201ENST00000400949 179 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.646-201ENST00000410980 101 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 GJA6P-201ENST00000415117 1042 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AL590609.2-201ENST00000421430 368 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC099336.2-201ENST00000422457 254 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RAC1P6-201ENST00000423911 575 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RPL21P23-201ENST00000446654 460 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC104058.1-201ENST00000448028 297 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC239809.1-201ENST00000450470 217 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC104634.1-201ENST00000452720 462 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 CECR9-201ENST00000453421 199 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC099560.2-201ENST00000457554 255 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 MIR2053-201ENST00000459295 91 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC004453.1-201ENST00000487895 408 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RPL23AP55-201ENST00000498163 452 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC108078.2-201ENST00000510750 236 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC016065.2-201ENST00000514530 444 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-264P-201ENST00000517134 104 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 IGLVIV-53-201ENST00000520107 367 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AP000859.1-201ENST00000525536 307 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 MIR3941-201ENST00000582572 103 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AL355812.1-201ENST00000603215 216 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC025588.3-201ENST00000604182 274 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 AC090337.1-201ENST00000579651 2074 ntBASIC5.08□□□□□ -1.6
UBE3DQ7Z6J8 ZNF33CP-201ENST00000432492 2030 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC108751.5-201ENST00000492880 1336 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 MIR323A-201ENST00000362199 86 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.47-201ENST00000362697 108 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNU1-146P-201ENST00000364015 165 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNVU1-3-201ENST00000364313 161 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-1127P-201ENST00000384580 107 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.556-201ENST00000384677 113 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 MIR143-201ENST00000385300 106 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP241-201ENST00000391326 114 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNU4-25P-201ENST00000410569 230 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RN7SKP206-201ENST00000410823 293 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms