Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AL139095.3-201ENST00000419672 1203 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AL589872.1-201ENST00000426602 288 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 UBE2V1P8-201ENST00000437166 265 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 DHFRP3-201ENST00000455595 559 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 snoU109.4-201ENST00000458953 143 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RPL7P15-201ENST00000461190 712 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RPS4XP10-201ENST00000465034 731 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 FTH1P2-201ENST00000466086 412 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC010618.1-201ENST00000469924 477 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC021382.1-201ENST00000483523 359 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC012170.1-201ENST00000495139 359 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 IGKV2D-36-201ENST00000518643 226 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC022616.6-201ENST00000520479 119 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 CCNG2P1-201ENST00000549521 1000 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC136624.4-201ENST00000573044 370 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC245014.2-201ENST00000603689 287 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AP000860.1-201ENST00000605250 559 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC246785.4-201ENST00000605374 287 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AL109618.2-201ENST00000605527 211 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 BX664608.1-201ENST00000610519 487 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC110994.2-201ENST00000635481 492 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AL049555.1-201ENST00000562834 1933 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC016588.2-201ENST00000632484 3021 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC074029.4-201ENST00000624796 1859 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC067945.1-201ENST00000342609 618 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 Y_RNA.296-201ENST00000364930 108 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 SNORD51-201ENST00000384320 80 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 MT-TC-201ENST00000387405 66 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 U3.20-201ENST00000390909 217 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 MRPL42P2-201ENST00000403169 426 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 RPS29P17-201ENST00000430795 166 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 UBE2V1P13-201ENST00000436983 439 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 PHBP16-201ENST00000446318 950 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC003071.1-201ENST00000451219 789 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AL353691.1-201ENST00000451332 387 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 RPL5P30-201ENST00000465511 891 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 RN7SL812P-201ENST00000493791 279 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC114967.1-201ENST00000504890 259 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 HMGB1P29-201ENST00000505659 499 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 MTCO1P24-201ENST00000515438 1558 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 HIGD1AP3-201ENST00000515857 278 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC008694.2-201ENST00000517591 306 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC134698.4-201ENST00000523451 826 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AL606834.2-201ENST00000602954 668 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC004853.1-201ENST00000604902 698 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AP003117.2-201ENST00000606010 545 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AF250324.2-201ENST00000608299 610 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC105429.2-201ENST00000610567 517 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 AC090517.2-201ENST00000614966 680 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 CR381653.2-201ENST00000624041 768 ntBASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD3Q3KNS1 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 AC009902.3-201ENST00000606235 2172 ntBASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD3Q3KNS1 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms