Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 MTND3P24-201ENST00000506306 329 ntBASIC3.05□□□□□ -1.92
SHHQ15465 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC112198.4-201ENST00000515450 351 ntBASIC3.05□□□□□ -1.92
SHHQ15465 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.05□□□□□ -1.92
SHHQ15465 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SHHQ15465 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
SHHQ15465 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.05□□□□□ -1.92
SHHQ15465 ZNF192P1-203ENST00000565888 810 ntBASIC3.05□□□□□ -1.92
SHHQ15465 DEFB122-202ENST00000569013 197 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.05□□□□□ -1.92
SHHQ15465 MIR4760-201ENST00000585040 80 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.05□□□□□ -1.92
SHHQ15465 AL591516.1-201ENST00000611326 274 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC104763.3-201ENST00000613765 618 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC025016.1-201ENST00000616746 682 ntBASIC3.05□□□□□ -1.92
SHHQ15465 RNU6-156P-201ENST00000621869 107 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.05□□□□□ -1.92
SHHQ15465 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.05□□□□□ -1.92
SHHQ15465 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.04□□□□□ -1.92
SHHQ15465 AL592494.2-201ENST00000425455 1548 ntBASIC3.04□□□□□ -1.92
SHHQ15465 MTCO1P9-201ENST00000505577 1534 ntBASIC3.04□□□□□ -1.92
SHHQ15465 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SHHQ15465 RNA5SP189-201ENST00000364920 115 ntBASIC3.04□□□□□ -1.92
SHHQ15465 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SHHQ15465 MIR591-201ENST00000385290 95 ntBASIC3.04□□□□□ -1.92
SHHQ15465 RPS3AP26-201ENST00000398259 784 ntBASIC3.04□□□□□ -1.92
SHHQ15465 MIR1289-2-201ENST00000408360 111 ntBASIC3.04□□□□□ -1.92
SHHQ15465 RNA5SP21-201ENST00000410917 96 ntBASIC3.04□□□□□ -1.92
SHHQ15465 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHHQ15465 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHHQ15465 MTND2P21-201ENST00000436242 1042 ntBASIC3.04□□□□□ -1.92
SHHQ15465 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.04□□□□□ -1.92
SHHQ15465 AC126121.1-201ENST00000482313 553 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC108210.2-201ENST00000503681 201 ntBASIC3.04□□□□□ -1.92
SHHQ15465 NAMPTP2-201ENST00000505629 1115 ntBASIC3.04□□□□□ -1.92
SHHQ15465 MTCO1P31-201ENST00000506355 492 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC008628.1-201ENST00000508663 265 ntBASIC3.04□□□□□ -1.92
SHHQ15465 PCBP2P3-201ENST00000509726 843 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.04□□□□□ -1.92
SHHQ15465 AC110760.3-202ENST00000515177 371 ntBASIC3.04□□□□□ -1.92
SHHQ15465 RN7SKP277-201ENST00000516895 283 ntBASIC3.04□□□□□ -1.92
SHHQ15465 SNORA31.21-201ENST00000517180 77 ntBASIC3.04□□□□□ -1.92
SHHQ15465 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.04□□□□□ -1.92
SHHQ15465 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.04□□□□□ -1.92
SHHQ15465 OR6C73P-201ENST00000546432 358 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 TRAV37-201ENST00000553906 342 ntBASIC3.04□□□□□ -1.92
SHHQ15465 OR4H12P-201ENST00000556269 907 ntBASIC3.04□□□□□ -1.92
SHHQ15465 TGIF1P1-201ENST00000558095 802 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 MTND4LP25-201ENST00000570218 163 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.04□□□□□ -1.92
SHHQ15465 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.04□□□□□ -1.92
SHHQ15465 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AL391834.2-201ENST00000609982 546 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC121761.2-201ENST00000617300 689 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC022306.3-201ENST00000619930 550 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC006249.1-201ENST00000621223 471 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC022509.4-201ENST00000621404 572 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC010608.3-201ENST00000625048 527 ntBASIC3.04□□□□□ -1.92
SHHQ15465 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.04□□□□□ -1.92
SHHQ15465 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.04□□□□□ -1.92
SHHQ15465 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SHHQ15465 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SHHQ15465 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.03□□□□□ -1.92
SHHQ15465 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHHQ15465 MIR592-201ENST00000384959 97 ntBASIC3.03□□□□□ -1.92
SHHQ15465 RNU6-482P-201ENST00000391068 107 ntBASIC3.03□□□□□ -1.92
SHHQ15465 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SHHQ15465 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.03□□□□□ -1.92
SHHQ15465 VTA1P1-201ENST00000414044 866 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AC241520.1-201ENST00000422654 1099 ntBASIC3.03□□□□□ -1.92
SHHQ15465 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.03□□□□□ -1.92
SHHQ15465 AL158053.1-201ENST00000441503 453 ntBASIC3.03□□□□□ -1.92
SHHQ15465 RNF2P1-201ENST00000442955 1010 ntBASIC3.03□□□□□ -1.92
SHHQ15465 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.03□□□□□ -1.92
SHHQ15465 PTGES3P5-201ENST00000455109 434 ntBASIC3.03□□□□□ -1.92
SHHQ15465 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.03□□□□□ -1.92
SHHQ15465 OR5H5P-201ENST00000503164 928 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.03□□□□□ -1.92
SHHQ15465 HAUS1P3-201ENST00000523909 662 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AP003102.1-201ENST00000525638 661 ntBASIC3.03□□□□□ -1.92
SHHQ15465 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.03□□□□□ -1.92
SHHQ15465 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.03□□□□□ -1.92
SHHQ15465 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.03□□□□□ -1.92
SHHQ15465 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.03□□□□□ -1.92
SHHQ15465 NOP56P3-201ENST00000549457 385 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms