Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AMZ2P1-203ENST00000565833 850 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AC103710.1-201ENST00000610003 901 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AC009831.4-201ENST00000620744 325 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 MIR219B-201ENST00000637023 88 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 MIR7153-201ENST00000637758 57 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC1.55□□□□□ -2.16
COL7A1Q02388 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC1.55□□□□□ -2.16
COL7A1Q02388 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL7A1Q02388 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.55□□□□□ -2.16
COL7A1Q02388 CUBN-201ENST00000377823 705 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC009237.2-201ENST00000421358 284 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 MTCO2P17-201ENST00000424336 677 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC007182.2-201ENST00000489251 402 ntBASIC1.55□□□□□ -2.16
COL7A1Q02388 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC1.55□□□□□ -2.16
COL7A1Q02388 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.55□□□□□ -2.16
COL7A1Q02388 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL7A1Q02388 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL7A1Q02388 AC009487.4-201ENST00000624969 3585 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 AL445213.1-201ENST00000412589 747 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.54□□□□□ -2.16
COL7A1Q02388 AL513175.2-201ENST00000422071 443 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 SETP10-201ENST00000424368 814 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 GAPDHP27-201ENST00000447427 1020 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 SEPT7P3-201ENST00000455017 621 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.54□□□□□ -2.16
COL7A1Q02388 AC010872.1-201ENST00000624225 675 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
COL7A1Q02388 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL7A1Q02388 Y_RNA.191-201ENST00000363972 113 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC1.54□□□□□ -2.16
COL7A1Q02388 AC090543.1-201ENST00000492168 485 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
COL7A1Q02388 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC1.54□□□□□ -2.16
COL7A1Q02388 MIR4303-201ENST00000581299 66 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 AL391813.2-201ENST00000609113 322 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 MIR6504-201ENST00000613520 61 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 AC241377.1-201ENST00000619797 406 ntBASIC1.54□□□□□ -2.16
COL7A1Q02388 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
COL7A1Q02388 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
COL7A1Q02388 Y_RNA.224-201ENST00000364308 111 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.53□□□□□ -2.16
COL7A1Q02388 OR4K11P-201ENST00000431829 904 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 Z73417.1-201ENST00000447373 778 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.53□□□□□ -2.16
COL7A1Q02388 RPL38P4-201ENST00000502376 214 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 USP9YP5-201ENST00000511770 630 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 CCNHP1-201ENST00000513311 678 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 OR7K1P-201ENST00000546439 926 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AC002984.1-201ENST00000591692 448 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AC108479.2-201ENST00000617314 601 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 MIR6515-201ENST00000619843 57 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 MIR6766-201ENST00000622641 72 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AC095050.2-201ENST00000510748 1458 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL7A1Q02388 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
COL7A1Q02388 SNORA51.11-201ENST00000384442 131 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AP000275.1-201ENST00000411943 390 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AC092427.1-202ENST00000430569 476 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL7A1Q02388 AC002553.2-201ENST00000453217 340 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC1.53□□□□□ -2.16
COL7A1Q02388 LINC00888-204ENST00000487386 421 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 MEPE-206ENST00000511670 550 ntTSL 4 BASIC1.53□□□□□ -2.16
COL7A1Q02388 SCARNA16.3-201ENST00000516595 184 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 MIR5007-201ENST00000583098 95 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 CU459211.1-201ENST00000635667 749 ntBASIC1.53□□□□□ -2.16
COL7A1Q02388 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL7A1Q02388 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL7A1Q02388 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL7A1Q02388 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
COL7A1Q02388 MIR21-201ENST00000362134 72 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 OR5H15-201ENST00000383696 930 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 MIR9-3-201ENST00000385084 90 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 HSPD1P16-201ENST00000402302 394 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 AL354719.1-201ENST00000406535 843 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 AC017007.3-201ENST00000479865 435 ntBASIC1.53□□□□□ -2.17
COL7A1Q02388 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC1.53□□□□□ -2.17
COL7A1Q02388 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC1.53□□□□□ -2.17
COL7A1Q02388 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.53□□□□□ -2.17
COL7A1Q02388 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC1.53□□□□□ -2.17
COL7A1Q02388 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
COL7A1Q02388 NR1H5P-201ENST00000452683 1377 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AL445437.1-201ENST00000623157 3087 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 RNY1-201ENST00000364228 113 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-1-201ENST00000383898 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-42P-201ENST00000384165 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-36P-201ENST00000384172 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-4P-201ENST00000384205 107 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms