Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 RNU6-334P-201ENST00000517072 102 ntBASIC3□□□□□ -1.93
COL4A4P53420 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3□□□□□ -1.93
COL4A4P53420 IGKV3-31-201ENST00000523109 329 ntBASIC3□□□□□ -1.93
COL4A4P53420 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 CBX3P7-201ENST00000532876 502 ntBASIC3□□□□□ -1.93
COL4A4P53420 AL356057.1-201ENST00000533798 831 ntBASIC3□□□□□ -1.93
COL4A4P53420 SERPINE4P-201ENST00000554978 281 ntBASIC3□□□□□ -1.93
COL4A4P53420 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3□□□□□ -1.93
COL4A4P53420 AC012213.3-201ENST00000577199 777 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC103987.3-201ENST00000582071 292 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3□□□□□ -1.93
COL4A4P53420 AC025754.2-201ENST00000606491 432 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC245297.2-201ENST00000610119 565 ntBASIC3□□□□□ -1.93
COL4A4P53420 AC083865.1-201ENST00000636634 831 ntBASIC3□□□□□ -1.93
COL4A4P53420 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL4A4P53420 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
COL4A4P53420 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
COL4A4P53420 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
COL4A4P53420 RNU6-609P-201ENST00000365459 107 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.99□□□□□ -1.93
COL4A4P53420 AL138827.1-201ENST00000402666 306 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AC090960.1-201ENST00000421072 306 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 UBE2D3P1-201ENST00000436669 444 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A4P53420 RPL31P53-201ENST00000457065 348 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 DYNLL1P6-201ENST00000503440 264 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 KLHL2P1-201ENST00000508691 521 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 AF213884.2-201ENST00000510417 903 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.99□□□□□ -1.93
COL4A4P53420 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A4P53420 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AC007954.1-201ENST00000554198 494 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.99□□□□□ -1.93
COL4A4P53420 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.99□□□□□ -1.93
COL4A4P53420 AP002782.1-201ENST00000623107 614 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.99□□□□□ -1.93
COL4A4P53420 NEAT1-202ENST00000501122 22743 ntBASIC2.99□□□□□ -1.93
COL4A4P53420 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A4P53420 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL4A4P53420 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.99□□□□□ -1.93
COL4A4P53420 RNU1-35P-201ENST00000362782 153 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNORD116-9-201ENST00000384000 95 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNORD116-3-201ENST00000384287 95 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNORD116-7-201ENST00000384404 95 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNORD116-5-201ENST00000384462 95 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNORD116-4-201ENST00000384733 96 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 MIR7-1-201ENST00000384871 110 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 MTATP6P20-201ENST00000414147 562 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 RPS24P7-201ENST00000416921 246 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC009963.1-201ENST00000417265 157 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 SEPT2P1-201ENST00000419651 180 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 MTCO1P52-201ENST00000433928 531 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 Z85994.2-201ENST00000434327 452 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 MED6P1-201ENST00000439659 713 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SNRPFP2-201ENST00000440710 251 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 AL133217.1-201ENST00000450980 425 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 RPL21P41-201ENST00000459863 264 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.98□□□□□ -1.93
COL4A4P53420 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SUMO2P5-201ENST00000506790 245 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.98□□□□□ -1.93
COL4A4P53420 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.98□□□□□ -1.93
COL4A4P53420 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.98□□□□□ -1.93
COL4A4P53420 AC134698.4-201ENST00000523451 826 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC090819.1-201ENST00000523800 1111 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AP003066.2-201ENST00000529375 555 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A4P53420 AC107016.2-201ENST00000547968 190 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC074029.2-201ENST00000551045 634 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 RNU4-5P-201ENST00000607255 135 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AL355802.4-201ENST00000607635 548 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AC117490.2-201ENST00000610042 594 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A4P53420 AC009318.3-201ENST00000616916 503 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 AP002791.1-201ENST00000623291 381 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A4P53420 AC009487.4-201ENST00000624969 3585 ntBASIC2.98□□□□□ -1.93
COL4A4P53420 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A4P53420 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A4P53420 MTND4P34-201ENST00000572715 1371 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms