Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC018755.4-201ENST00000619715 454 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC092650.2-201ENST00000619984 902 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 AC090897.3-201ENST00000636973 1157 ntBASIC2.2□□□□□ -2.06
HLA-DMBP28068 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.2□□□□□ -2.06
HLA-DMBP28068 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HLA-DMBP28068 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 ASNSP3-201ENST00000451989 1306 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 RNA5SP258-201ENST00000362750 119 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 RNU6-1226P-201ENST00000384317 107 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 SSXP10-201ENST00000402595 565 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AL139095.1-201ENST00000404326 391 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 RNA5SP492-201ENST00000411330 114 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 USP9YP36-201ENST00000424581 829 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 MTATP6P4-201ENST00000427725 675 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 SNRPEP4-201ENST00000435815 279 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
HLA-DMBP28068 MUPP-201ENST00000438111 566 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC112492.1-201ENST00000449607 712 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AL445669.2-201ENST00000454425 421 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC015724.1-201ENST00000478577 156 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 OR5H5P-201ENST00000503164 928 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC091917.2-201ENST00000505002 744 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC004062.1-201ENST00000509926 645 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 MTCO3P44-201ENST00000510977 541 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 RNU6-488P-201ENST00000515918 99 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 HSPE1P20-201ENST00000538133 289 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC034105.3-201ENST00000565294 442 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC087481.2-201ENST00000565492 330 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 LARP7P3-201ENST00000579888 337 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 AL355493.4-201ENST00000618530 292 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC091046.2-201ENST00000620775 665 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 SCARNA15.3-201ENST00000626315 122 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 SCARNA4.1-201ENST00000628597 123 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC083865.1-201ENST00000636634 831 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 AC017104.5-201ENST00000637647 639 ntBASIC2.19□□□□□ -2.06
HLA-DMBP28068 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HLA-DMBP28068 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HLA-DMBP28068 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
HLA-DMBP28068 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 RNU6-7-201ENST00000364784 107 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 RNU6-8-201ENST00000365467 107 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 RNU1-109P-201ENST00000383960 147 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 RN7SKP220-201ENST00000410611 288 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 RNU4-78P-201ENST00000410940 126 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 MTCO3P12-201ENST00000416718 547 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC114973.1-201ENST00000429057 632 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 UBE2V1P5-201ENST00000440070 405 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 XKRY2-201ENST00000442362 1093 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 RPS23P3-201ENST00000470993 430 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 RPL21P131-201ENST00000497298 483 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 OR2A20P-203ENST00000498397 1268 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AIG1P1-201ENST00000503376 148 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC026412.2-201ENST00000512270 1075 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 SNORA31.1-201ENST00000515993 133 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 SNORA31.5-201ENST00000516190 133 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 SCARNA13-201ENST00000516672 275 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC022690.1-201ENST00000526681 550 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC113192.3-201ENST00000529152 742 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC027104.1-201ENST00000563702 681 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC006504.3-201ENST00000586818 523 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 XIAPP1-201ENST00000603162 600 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.18□□□□□ -2.06
HLA-DMBP28068 AC093732.2-201ENST00000607950 274 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms