Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 AL390838.2-201ENST00000602394 274 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AC007566.2-201ENST00000603642 413 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AC069545.1-201ENST00000605671 358 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AL138478.1-201ENST00000612252 832 ntBASIC3.2□□□□□ -1.9
CDX4O14627 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDX4O14627 uc_338.32-201ENST00000615087 172 ntBASIC3.2□□□□□ -1.9
CDX4O14627 MIR6715A-201ENST00000615929 79 ntBASIC3.2□□□□□ -1.9
CDX4O14627 Z99129.2-201ENST00000619967 314 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AL356321.1-201ENST00000621360 228 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AC004943.3-201ENST00000624116 600 ntBASIC3.2□□□□□ -1.9
CDX4O14627 AC138649.5-201ENST00000637456 137 ntBASIC3.2□□□□□ -1.9
CDX4O14627 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.2□□□□□ -1.9
CDX4O14627 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDX4O14627 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CDX4O14627 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.2□□□□□ -1.9
CDX4O14627 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.19□□□□□ -1.9
CDX4O14627 OR5BR1P-201ENST00000524992 1330 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.19□□□□□ -1.9
CDX4O14627 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.19□□□□□ -1.9
CDX4O14627 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
CDX4O14627 RNA5SP167-201ENST00000365461 116 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RNU6-441P-201ENST00000384545 106 ntBASIC3.19□□□□□ -1.9
CDX4O14627 SNORD116-23-201ENST00000384645 92 ntBASIC3.19□□□□□ -1.9
CDX4O14627 MIR217-201ENST00000384817 110 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RNU6-1300P-201ENST00000391046 108 ntBASIC3.19□□□□□ -1.9
CDX4O14627 MTND4P13-201ENST00000402078 1023 ntBASIC3.19□□□□□ -1.9
CDX4O14627 HSPE1P8-201ENST00000406997 288 ntBASIC3.19□□□□□ -1.9
CDX4O14627 MIR1250-201ENST00000408098 113 ntBASIC3.19□□□□□ -1.9
CDX4O14627 MIR1183-201ENST00000408856 89 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.19□□□□□ -1.9
CDX4O14627 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 Z99755.1-201ENST00000414048 380 ntBASIC3.19□□□□□ -1.9
CDX4O14627 NANOGP6-201ENST00000429190 847 ntBASIC3.19□□□□□ -1.9
CDX4O14627 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 GTF2IP7-202ENST00000436677 309 ntBASIC3.19□□□□□ -1.9
CDX4O14627 MTCO2P20-201ENST00000437339 673 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.19□□□□□ -1.9
CDX4O14627 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.19□□□□□ -1.9
CDX4O14627 HMGB3P30-201ENST00000457863 606 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RPL23AP44-201ENST00000482216 473 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC092045.1-201ENST00000495716 1231 ntBASIC3.19□□□□□ -1.9
CDX4O14627 VN1R104P-201ENST00000505115 1009 ntBASIC3.19□□□□□ -1.9
CDX4O14627 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.19□□□□□ -1.9
CDX4O14627 AC104057.1-201ENST00000515547 497 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RNA5SP356-201ENST00000515972 94 ntBASIC3.19□□□□□ -1.9
CDX4O14627 RNA5SP309-201ENST00000516670 106 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.19□□□□□ -1.9
CDX4O14627 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.19□□□□□ -1.9
CDX4O14627 LSM6P2-201ENST00000552208 177 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC009097.3-201ENST00000563557 1018 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.19□□□□□ -1.9
CDX4O14627 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.19□□□□□ -1.9
CDX4O14627 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.19□□□□□ -1.9
CDX4O14627 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.19□□□□□ -1.9
CDX4O14627 AC008751.2-201ENST00000597885 980 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC021755.4-201ENST00000616620 456 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC068722.2-201ENST00000618734 544 ntBASIC3.19□□□□□ -1.9
CDX4O14627 AC026634.1-201ENST00000634369 198 ntBASIC3.19□□□□□ -1.9
CDX4O14627 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDX4O14627 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CDX4O14627 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CDX4O14627 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CDX4O14627 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CDX4O14627 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CDX4O14627 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CDX4O14627 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.18□□□□□ -1.9
CDX4O14627 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CDX4O14627 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
CDX4O14627 OR5J1P-201ENST00000313544 939 ntBASIC3.18□□□□□ -1.9
CDX4O14627 RNU6-492P-201ENST00000363035 104 ntBASIC3.18□□□□□ -1.9
CDX4O14627 SNORD74.4-201ENST00000364129 80 ntBASIC3.18□□□□□ -1.9
CDX4O14627 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CDX4O14627 Y_RNA.472-201ENST00000384322 102 ntBASIC3.18□□□□□ -1.9
CDX4O14627 MIR649-201ENST00000384843 97 ntBASIC3.18□□□□□ -1.9
CDX4O14627 MIR93-201ENST00000385024 80 ntBASIC3.18□□□□□ -1.9
CDX4O14627 RNA5SP39-201ENST00000411245 120 ntBASIC3.18□□□□□ -1.9
CDX4O14627 AC073264.1-201ENST00000411508 416 ntBASIC3.18□□□□□ -1.9
CDX4O14627 RPL31P2-201ENST00000413849 377 ntBASIC3.18□□□□□ -1.9
CDX4O14627 Z93242.1-201ENST00000427102 353 ntBASIC3.18□□□□□ -1.9
CDX4O14627 MOB1AP1-201ENST00000430903 535 ntBASIC3.18□□□□□ -1.9
CDX4O14627 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.18□□□□□ -1.9
CDX4O14627 SEPT7P5-201ENST00000434048 306 ntBASIC3.18□□□□□ -1.9
CDX4O14627 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.18□□□□□ -1.9
CDX4O14627 MTCYBP31-201ENST00000438855 1122 ntBASIC3.18□□□□□ -1.9
CDX4O14627 AC004022.1-201ENST00000447766 1066 ntBASIC3.18□□□□□ -1.9
CDX4O14627 AL589880.1-201ENST00000448271 287 ntBASIC3.18□□□□□ -1.9
CDX4O14627 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.18□□□□□ -1.9
CDX4O14627 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.18□□□□□ -1.9
CDX4O14627 AC146507.1-201ENST00000468335 354 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms