Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC023141.12-201ENST00000512399 199 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 OR6C73P-201ENST00000546432 358 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC024909.2-201ENST00000553035 286 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 SERPINE4P-201ENST00000554978 281 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 ACTR3BP3-201ENST00000565577 979 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 ROCK1P1-201ENST00000573767 549 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 SNORD39.3-201ENST00000584451 71 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC020914.6-201ENST00000594327 272 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC006270.3-201ENST00000605967 1036 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 AC122108.2-201ENST00000611946 526 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 BDP1P-201ENST00000582658 1990 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 MTND5P24-201ENST00000438892 1767 ntBASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SNX9Q9Y5X1 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC107081.3-201ENST00000612715 2034 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 RPL7P60-201ENST00000397636 735 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 RAB9AP3-201ENST00000412737 573 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 MTCYBP38-201ENST00000417160 1123 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 PSMA2P3-201ENST00000429685 675 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AL360221.1-201ENST00000445989 335 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 MTCO2P7-201ENST00000446518 666 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AL133547.1-201ENST00000448546 220 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 MTND2P19-201ENST00000449129 1012 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 RAB9AP1-201ENST00000449393 573 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 OR6C5P-201ENST00000452388 923 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC098824.1-201ENST00000453565 980 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 ANP32BP2-201ENST00000454525 545 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 snoU13.7-201ENST00000459220 104 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 RNU7-170P-201ENST00000459303 61 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC069499.1-201ENST00000489433 509 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 TRBV12-2-201ENST00000489763 344 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 KLRA1P-201ENST00000503499 986 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC109458.1-201ENST00000508858 316 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 MTCYBP37-201ENST00000510642 1133 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 TRMT10BP1-201ENST00000519377 943 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 SUMO2P20-201ENST00000520803 283 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 ARL2BPP5-201ENST00000523141 481 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC090502.2-201ENST00000549267 280 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC007954.1-201ENST00000554198 494 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC005951.1-201ENST00000576706 485 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC064872.1-201ENST00000604823 1072 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC006133.1-201ENST00000617106 264 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC092650.2-201ENST00000619984 902 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC099063.3-201ENST00000642066 185 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 ZNF285B-201ENST00000561698 1767 ntBASIC4.01□□□□□ -1.77
SNX9Q9Y5X1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SNX9Q9Y5X1 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4□□□□□ -1.77
SNX9Q9Y5X1 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SNX9Q9Y5X1 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SNX9Q9Y5X1 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SNX9Q9Y5X1 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SNX9Q9Y5X1 SNRPEP3-201ENST00000338402 276 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
SNX9Q9Y5X1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4□□□□□ -1.77
SNX9Q9Y5X1 RNU6-657P-201ENST00000383904 107 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 RNU6-444P-201ENST00000383988 108 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 RNA5SP424-201ENST00000390988 115 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 AC007066.1-201ENST00000392902 381 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 PTMAP2-201ENST00000397627 327 ntBASIC4□□□□□ -1.77
SNX9Q9Y5X1 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4□□□□□ -1.77
SNX9Q9Y5X1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
SNX9Q9Y5X1 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms