Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC6.34□□□□□ -1.4
SHROOM4Q9ULL8 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
SHROOM4Q9ULL8 AC091946.2-201ENST00000606105 291 ntBASIC6.34□□□□□ -1.4
SHROOM4Q9ULL8 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC6.34□□□□□ -1.4
SHROOM4Q9ULL8 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC107982.1-201ENST00000507171 1300 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 RNA5SP235-201ENST00000365411 114 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 ARF4P3-201ENST00000397387 509 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 RPL23AP69-201ENST00000431134 458 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AL139132.1-201ENST00000431587 344 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 USP9YP7-201ENST00000436723 430 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AL009048.1-201ENST00000450437 298 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 USP9YP32-201ENST00000452432 430 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 NDUFB9P3-201ENST00000521269 501 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AL121576.1-201ENST00000556055 276 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC015688.2-201ENST00000584523 262 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 AC004943.3-201ENST00000624116 600 ntBASIC6.33□□□□□ -1.4
SHROOM4Q9ULL8 ZNF37BP-203ENST00000452306 1352 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 SNORA54-201ENST00000384281 123 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 MIR506-201ENST00000384998 124 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 RPL5P18-201ENST00000406671 891 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 LUZP4P1-201ENST00000415420 344 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AL356320.2-201ENST00000417263 507 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 RPS6P12-201ENST00000432491 726 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC005410.1-202ENST00000460347 485 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC010460.2-201ENST00000509054 677 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 RNU6-1225P-201ENST00000516336 65 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC005832.3-201ENST00000537929 631 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC135001.1-201ENST00000544546 283 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 TUG1_1.1-201ENST00000610654 145 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 AC231759.1-201ENST00000616455 597 ntBASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SHROOM4Q9ULL8 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 OR5H2-201ENST00000355273 945 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AL121972.1-201ENST00000402023 252 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 ATP5C1P1-201ENST00000441945 895 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AL606517.1-201ENST00000446914 387 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC140076.1-201ENST00000449897 361 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 RN7SL863P-201ENST00000462370 296 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 RN7SL93P-201ENST00000463035 293 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC011979.1-201ENST00000472300 483 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC091826.1-201ENST00000514065 313 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC136601.2-201ENST00000604356 474 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 OR2AS2P-201ENST00000606902 342 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC106052.1-201ENST00000608029 497 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 AC073348.1-201ENST00000623002 331 ntBASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 UGP2-231ENST00000627474 264 ntTSL 5 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
SHROOM4Q9ULL8 PNPT1P2-201ENST00000456768 2050 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 RNA5-8SP4-201ENST00000365096 150 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 MRPS18BP2-201ENST00000434310 759 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 SKP1P1-201ENST00000438081 489 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 MTCO2P25-201ENST00000447065 681 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 DNAJC19P1-201ENST00000455312 319 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 MYL12AP1-201ENST00000518490 515 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AC107954.1-201ENST00000565906 727 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AC025588.3-201ENST00000604182 274 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AC027449.1-201ENST00000608890 407 ntBASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC6.3□□□□□ -1.4
SHROOM4Q9ULL8 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms